RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 AGAP20933 346 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 EPHA2P29317 976 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CNR2P34972 360 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CRISP3P54108 245 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GEMP55040 296 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PCBP4P57723 403 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 IRF8Q02556 426 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RBBP4Q09028 425 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SCGB2A2Q13296 93 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GAB1Q13480 694 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SLBPQ14493 270 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ZBTB6Q15916 424 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 C6orf136Q5SQH8 315 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PRAMEF20Q5VT98 475 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 S100A7AQ86SG5 101 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TMEM135Q86UB9 458 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 KIAA0319LQ8IZA0 1049 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PLPP5Q8NEB5 264 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 C1orf216Q8TAB5 229 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ISOC2Q96AB3 205 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SPATA33Q96N06 139 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 AMDHD1Q96NU7 426 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 COPS8Q99627 209 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHST5Q9GZS9 411 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GSX1Q9H4S2 264 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 WDCPQ9H6R7 721 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ZNF430Q9H8G1 570 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SEC61A2Q9H9S3 476 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RNF122Q9H9V4 155 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CORO2BQ9UQ03 480 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RCE1Q9Y256 329 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NOP16Q9Y3C1 178 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 FBXO7Q9Y3I1 522 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 COL1A2P08123 1366 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 COLCA2A8K830 154 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 HAS3O00219 553 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 IFNA6P05013 189 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 C8GP07360 202 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NPSP0C0P6 89 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RAB6AP20340 208 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CD80P33681 288 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 KDELR2P33947 212 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHI3L1P36222 383 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 UBE2KP61086 200 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MAXP61244 160 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 RAB11BQ15907 218 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 HAGHQ16775 308 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NCR3LG1Q68D85 454 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 HBMQ6B0K9 141 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 KIAA1211LQ6NV74 962 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TCEANCQ8N8B7 351 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR13C2Q8NGS9 318 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR5R1Q8NH85 324 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 UBA3Q8TBC4 463 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 APH1BQ8WW43 257 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ARNTL2Q8WYA1 636 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PNPLA2Q96AD5 504 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PANX1Q96RD7 426 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 C20orf24Q9BUV8 137 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TM6SF2Q9BZW4 377 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 LMAN1LQ9HAT1 526 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TCFL5Q9UL49 500 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 LAMB4A4D0S4 1761 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHD5Q8TDI0 1954 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TRDV1A0A1B0GX56 115 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MKRN2OSH3BPM6 223 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 K7ERU9 68 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 PEX12O00623 359 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 HCRTR2O43614 444 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR1I1O60431 355 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TPST2O60704 377 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SH3BGRLO75368 114 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MMP3P08254 477 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 DAOP14920 347 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NME2P22392 152 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHATP28329 748 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ADH6P28332 368 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TACR3P29371 465 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 AQP1P29972 269 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GDNFP39905 211 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHRNA4P43681 627 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CDKN1BP46527 198 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 BACE1P56817 501 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SH3BP2P78314 561 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SP3Q02447 781 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 TAZQ16635 292 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MRNIPQ6NTE8 343 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MED27Q6P2C8 311 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 GDPD4Q6W3E5 623 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MOB3CQ70IA8 216 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 NUP54Q7Z3B4 507 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 THOC6Q86W42 341 aaKnown RBP5.38□□□□□ -1.55
SCN1A-216ENST00000637968 BAP18Q8IXM2 172 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 AQP11Q8NBQ7 271 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 OR8U1Q8NH10 309 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 CHTF18Q8WVB6 975 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 SMARCD2Q92925 531 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 ATF6BQ99941 703 aa5.38□□□□□ -1.55
SCN1A-216ENST00000637968 MRIQ9BWK5 157 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms