RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 GTPBP1O00178 669 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 B3GALT2O43825 422 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ACP5P13686 325 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HIST1H1TP22492 207 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 APEX1P27695 318 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 KIR2DL3P43628 341 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SKP1P63208 163 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MRPS21P82921 87 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 STX4Q12846 297 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HTR4Q13639 388 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TRIP6Q15654 476 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MPEG1Q2M385 716 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF791Q3KP31 576 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CCNJQ5T5M9 372 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CD276Q5ZPR3 534 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ARHGAP11AQ6P4F7 1023 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CD200R1LQ6Q8B3 271 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CORO6Q6QEF8 472 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ARL9Q6T311 187 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF322Q6U7Q0 402 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 TMPRSS7Q7RTY8 843 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 KIAA0907Q7Z7F0 614 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 GHDCQ8N2G8 530 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 LRRC25Q8N386 305 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF740Q8NDX6 193 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR51G2Q8NGK0 314 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR6T1Q8NGN1 323 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR2L8Q8NGY9 312 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 LRRC20Q8TCA0 184 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 APOBEC4Q8WW27 367 aaKnown RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PHYHIPQ92561 330 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 THRSPQ92748 146 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SNAPC3Q92966 411 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ZSWIM3Q96MP5 696 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 LRFN5Q96NI6 719 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 OR7D2Q96RA2 312 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ATF6BQ99941 703 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 MARVELD1Q9BSK0 173 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 YIPF4Q9BSR8 244 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 THAP7Q9BT49 309 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 ALG8Q9BVK2 526 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 HDAC8Q9BY41 377 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 CTPS2Q9NRF8 586 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 SIRT3Q9NTG7 399 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-214ENST00000637038 NPFFR2Q9Y5X5 522 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 PRUNE2Q8WUY3 3088 aa3.71□□□□□ -1.82
SCN1A-214ENST00000637038 A0A087WUU8 490 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 A0A0A6YYD5 115 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 UBE2QL1A1L167 161 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 CD8B2A6NJW9 211 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 C12orf71A8MTZ7 269 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 C1QTNF9BB2RNN3 333 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 GPR37O15354 613 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 C1QTNF9P0C862 333 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 SAGP10523 405 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 CD8BP10966 210 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 SLC6A11P48066 632 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 DHPSP49366 369 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 EPHA5P54756 1037 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 RAG2P55895 527 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 RPS15AP62244 130 aaKnown RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 MRPS10P82664 201 aaKnown RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 FABP5Q01469 135 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 TCEA2Q15560 299 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ESCO2Q56NI9 601 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ZMAT1Q5H9K5 638 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 FAM69AQ5T7M9 428 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 TMEM107Q6UX40 140 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ZNF620Q6ZNG0 422 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 UTS2BQ765I0 119 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 FAM220AQ7Z4H9 259 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 MRGPREQ86SM8 312 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 NRMQ8IXM6 262 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 CCDC116Q8IYX3 515 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ELMOD2Q8IZ81 293 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 OR5D16Q8NGK9 328 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 BRIX1Q8TDN6 353 aaKnown RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 KCNE4Q8WWG9 221 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 GAL3ST3Q96A11 431 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 MRGPRX3Q96LB0 322 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 BEX2Q9BXY8 128 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 EGLN3Q9H6Z9 239 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 GPR52Q9Y2T5 361 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 TICRRQ7Z2Z1 1910 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ARPC4-TTLL3A0A0A6YYG9 625 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 FEZF1A0PJY2 475 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 EPOPA6NHQ4 379 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 SCAMP1O15126 338 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 SURF4O15260 269 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 EEF1E1O43324 174 aaKnown RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 SSX4O60224 188 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 UBL3O95164 117 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 APOL3O95236 402 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 CH25HO95992 272 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ADH1BP00325 375 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 THBS1P07996 1170 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 IGFBP1P08833 259 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-214ENST00000637038 H2AFB2P0C5Z0 115 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 ERGP11308 486 aa3.7□□□□□ -1.82
SCN1A-214ENST00000637038 IFI30P13284 250 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms