RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 NDUFAB1O14561 156 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 HOXD4P09016 255 aaPredicted RBP18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PEPDP12955 493 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PRKCAP17252 672 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PGCP20142 388 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 POU3F2P20265 443 aaPredicted RBP18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PSMA4P25789 261 aaKnown RBP18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ADH6P28332 368 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PTGER4P35408 488 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 SLC6A8P48029 635 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 STARP49675 285 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 CLDN18P56856 261 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 FOXF1Q12946 379 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 QPRTQ15274 297 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 BCL2A1Q16548 175 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF311Q5JNZ3 666 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 C1orf185Q5T7R7 199 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 MTFR2Q6P444 385 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 GRAMD2AQ8IUY3 354 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 FITM2Q8N6M3 262 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 BCAS4Q8TDM0 211 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 PHF10Q8WUB8 498 aaKnown RBP18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ST8SIA1Q92185 356 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF524Q96C55 264 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 CCDC120Q96HB5 630 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 REXO5Q96IC2 774 aaKnown RBP18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ZNF607Q96SK3 696 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 SPATA5L1Q9BVQ7 753 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 ALKBH4Q9NXW9 302 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 AP3M1Q9Y2T2 418 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 CHST2Q9Y4C5 530 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 FAM215AQ9Y5M1 114 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 DOCK7Q96N67 2140 aa18.34■□□□□ 0.53
PTCD3-220ENST00000627371 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 H3BML4 177 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ADAM11O75078 769 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 NTN1O95631 604 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 LDLRP01130 860 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ELK4P28324 431 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 AQP1P29972 269 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 PRKAR1BP31321 381 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 VMACQ2NL98 169 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 SLC25A53Q5H9E4 307 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 RTL6Q6ICC9 239 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ZNF440Q8IYI8 595 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 TMEM234Q8WY98 164 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 MRGPRX4Q96LA9 322 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ZNF583Q96ND8 569 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 PIF1Q9H611 641 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ARMC7Q9H6L4 198 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 ARL8BQ9NVJ2 186 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 RLIMQ9NVW2 624 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 CMTM6Q9NX76 183 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 TAGLN3Q9UI15 199 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 AP4B1Q9Y6B7 739 aa18.33■□□□□ 0.52
PTCD3-220ENST00000627371 FAM220BPB1ANY3 271 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 H0Y3Z8 333 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 CPA2P48052 419 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 DLX5P56178 289 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 SRYQ05066 204 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 KRT72Q14CN4 511 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 SF3B4Q15427 424 aaKnown RBP eCLIP18.32■□□□□ 0.522e-6■■■□□ 18.7
PTCD3-220ENST00000627371 ACSF3Q4G176 576 aaPredicted RBP18.32■□□□□ 0.52
PTCD3-220ENST00000627371 INTS11Q5TA45 600 aaKnown RBP18.32■□□□□ 0.52
PTCD3-220ENST00000627371 ERICH5Q6P6B1 374 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 DHRS4L2Q6PKH6 230 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 B3GNT6Q6ZMB0 384 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 SLC15A3Q8IY34 581 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 CLIP4Q8N3C7 705 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 RPRMLQ8N4K4 120 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 MARVELD2Q8N4S9 558 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 FBXO27Q8NI29 283 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 ZPLD1Q8TCW7 415 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 SSC4DQ8WTU2 575 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 STOML1Q9UBI4 398 aa18.32■□□□□ 0.52
PTCD3-220ENST00000627371 DOPEY1Q5JWR5 2465 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 CFAP73A6NFT4 308 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 WIPF3A6NGB9 483 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 CCT8L1PA6NM43 557 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 FAAHO00519 579 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 SERPINB7O75635 380 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 RYKP34925 604 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 SLC7A2P52569 658 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 SESN3P58005 492 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 RAC1P63000 192 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 ADORA2A-AS1P86434 159 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 EPS8Q12929 822 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 TMEM211Q6ICI0 200 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 NCCRP1Q6ZVX7 275 aaPredicted RBP18.31■□□□□ 0.52
PTCD3-220ENST00000627371 MEIOBQ8N635 442 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 BHLHE22Q8NFJ8 381 aaPredicted RBP18.31■□□□□ 0.52
PTCD3-220ENST00000627371 ZNF563Q8TA94 476 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 SLC35B4Q969S0 331 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 RSPO3Q9BXY4 272 aaPredicted RBP18.31■□□□□ 0.52
PTCD3-220ENST00000627371 ACER3Q9NUN7 267 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 DOPEY2Q9Y3R5 2298 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 MED12LQ86YW9 2145 aa18.31■□□□□ 0.52
PTCD3-220ENST00000627371 BAHCC1Q9P281 2608 aa18.3■□□□□ 0.52
PTCD3-220ENST00000627371 SPTBN1Q01082 2364 aaKnown RBP18.3■□□□□ 0.52
PTCD3-220ENST00000627371 PRORSD1PA6NEY8 169 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms