RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MAFAQ8NHW3 353 aaPredicted RBP20.3■□□□□ 0.84
PNKP-220ENST00000627232 EDAQ92838 391 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 ADIPOR1Q96A54 375 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 SH3YL1Q96HL8 342 aaPredicted RBP20.3■□□□□ 0.84
PNKP-220ENST00000627232 OR8D2Q9GZM6 311 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 SLIRPQ9GZT3 109 aaKnown RBP20.3■□□□□ 0.84
PNKP-220ENST00000627232 ISYNA1Q9NPH2 558 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 FBXO8Q9NRD0 319 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 H2AFY2Q9P0M6 372 aaPredicted RBP20.3■□□□□ 0.84
PNKP-220ENST00000627232 EXOGQ9Y2C4 368 aaKnown RBP20.3■□□□□ 0.84
PNKP-220ENST00000627232 PMF1-BGLAPU3KQ54 211 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 RP1P56715 2156 aa20.3■□□□□ 0.84
PNKP-220ENST00000627232 KPNA4O00629 521 aaPredicted RBP20.29■□□□□ 0.84
PNKP-220ENST00000627232 SIGLEC6O43699 453 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 PTNP21246 168 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 HTR1FP30939 366 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 ZNF846Q147U1 533 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 VWA2Q5GFL6 755 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 PERM1Q5SV97 790 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 KIRREL2Q6UWL6 708 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 ZNF574Q6ZN55 896 aaPredicted RBP20.29■□□□□ 0.84
PNKP-220ENST00000627232 GID4Q8IVV7 300 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 CACTIN-AS1Q8N1I8 211 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 OR4D9Q8NGE8 314 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 NXF5Q9H1B4 397 aaKnown RBP20.29■□□□□ 0.84
PNKP-220ENST00000627232 ZBTB20Q9HC78 741 aaPredicted RBP20.29■□□□□ 0.84
PNKP-220ENST00000627232 ICAM5Q9UMF0 924 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 A3GALT2U3KPV4 340 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 ASXL3Q9C0F0 2248 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 PI4KAP42356 2102 aa20.29■□□□□ 0.84
PNKP-220ENST00000627232 CPED1A4D0V7 1026 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 CLDN25C9JDP6 229 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 RFPL3O75679 317 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 HBQ1P09105 142 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 SAGP10523 405 aaPredicted RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 OPRL1P41146 370 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 ETV5P41161 510 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 ETV1P50549 477 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 DOC2BQ14184 412 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 CXXC5Q7LFL8 322 aaKnown RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 CADM2Q8N3J6 435 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 SLC15A4Q8N697 577 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 OR6Q1Q8NGQ2 317 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 OR9Q1Q8NGQ5 310 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 OR13C2Q8NGS9 318 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 PIGKQ92643 395 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 EFHD2Q96C19 240 aaPredicted RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 CLIP3Q96DZ5 547 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 NUDT9Q9BW91 350 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 JAM3Q9BX67 310 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 WDR12Q9GZL7 423 aaKnown RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 TGIF2Q9GZN2 237 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 HMG20AQ9NP66 347 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 EXOSC3Q9NQT5 275 aaKnown RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 CCDC59Q9P031 241 aaKnown RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 SEC14L4Q9UDX3 406 aa20.28■□□□□ 0.84
PNKP-220ENST00000627232 ATXN7L1Q9ULK2 861 aaPredicted RBP20.28■□□□□ 0.84
PNKP-220ENST00000627232 LOC100506127A0A0U1RQW1 187 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 A0A1B0GVG6 124 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 HTR3EA5X5Y0 456 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 FAM86C2PA6NEL3 165 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 OR6C76A6NM76 312 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 TGFBR1P36897 503 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 WNT4P56705 351 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 COPZ1P61923 177 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 CCL7P80098 99 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 SIGLEC14Q08ET2 396 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 NSDHLQ15738 373 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 C1orf189Q5VU69 101 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 TMPRSS9Q7Z410 1059 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 ZBTB46Q86UZ6 589 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 NAT6Q93015 286 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 CHCHD6Q9BRQ6 235 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 VN1R1Q9GZP7 353 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 MMP27Q9H306 513 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 OCEL1Q9H607 264 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 AKIP1Q9NQ31 210 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 HINT3Q9NQE9 182 aaKnown RBP20.27■□□□□ 0.84
PNKP-220ENST00000627232 NDUFB11Q9NX14 153 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 IL20RAQ9UHF4 553 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 FER1L5A0AVI2 2057 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 PRUNE2Q8WUY3 3088 aa20.27■□□□□ 0.84
PNKP-220ENST00000627232 A0A087WUJ7 227 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 C2orf92A0A1B0GVN3 265 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 TO15178 435 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 ATXN8OSP0DMR3 200 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 FUT1P19526 365 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 EFNA3P52797 238 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 TMED1Q13445 227 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 ARMC4Q5T2S8 1044 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 PRPF38BQ5VTL8 546 aaKnown RBP20.27■□□□□ 0.83
PNKP-220ENST00000627232 PAQR6Q6TCH4 344 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 COX15Q7KZN9 410 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 AMER2Q8N7J2 671 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 ARSGQ96EG1 525 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 LMF1Q96S06 567 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 CENPOQ9BU64 300 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 LRRN3Q9H3W5 708 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 CMC2Q9NRP2 79 aa20.27■□□□□ 0.83
PNKP-220ENST00000627232 B3GNT3Q9Y2A9 372 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms