RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FAM162AQ96A26 154 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF524Q96C55 264 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 RNF145Q96MT1 663 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 GPR137Q96N19 417 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 ARHGDIGQ99819 225 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 EVA1AQ9H8M9 152 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 NPIPA1Q9UND3 350 aa17.88■□□□□ 0.45
UPF3A-211ENST00000618700 SHANK1Q9Y566 2161 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 C7orf72A4D263 438 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 CFAP73A6NFT4 308 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 AP3D1O14617 1153 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 FRS3O43559 492 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 SERPINA1P01009 418 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 PRG2P13727 222 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 HK1P19367 917 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 PGCP20142 388 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ACAA2P42765 397 aaKnown RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF41P51814 821 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF136P52737 540 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 TRIM25Q14258 630 aaKnown RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 TOMM34Q15785 309 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 GLYR1Q49A26 553 aaPredicted RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 CBLL1Q75N03 491 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF550Q7Z398 422 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 YRDCQ86U90 279 aaKnown RBP17.87■□□□□ 0.45
UPF3A-211ENST00000618700 SPPL2CQ8IUH8 684 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ULK2Q8IYT8 1036 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ASB9Q96DX5 294 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 WFDC6Q9BQY6 131 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 DEFB127Q9H1M4 99 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 SLC6A15Q9H2J7 730 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 KLHL28Q9NXS3 571 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 TAS2R10Q9NYW0 307 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 ACTR3BQ9P1U1 418 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 BAG5Q9UL15 447 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 VDAC3Q9Y277 283 aa17.87■□□□□ 0.45
UPF3A-211ENST00000618700 A0A1B0GVC2 190 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 CDC40O60508 579 aaKnown RBP eCLIP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 HCN1O60741 890 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 TRAPPC6AO75865 159 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 NTN1O95631 604 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 NUDT14O95848 222 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 FESP07332 822 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 GKN3PP0CG01 181 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF17P17021 662 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 PRKCAP17252 672 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 DLX5P56178 289 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 B3GALT5-AS1P59052 145 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 QPRTQ15274 297 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 TOMM20Q15388 145 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 KRTCAP3Q53RY4 240 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 SLC25A53Q5H9E4 307 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 WIPI1Q5MNZ9 446 aaPredicted RBP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 TRILQ7L0X0 811 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 YTHDF3Q7Z739 585 aaKnown RBP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 CHERPQ8IWX8 916 aaKnown RBP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 EID3Q8N140 333 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 OR14L1PQ8NHC6 308 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 NEIL3Q8TAT5 605 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 MCUR1Q96AQ8 359 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 ZBTB8AQ96BR9 441 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 CCDC124Q96CT7 223 aaKnown RBP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 NPAS1Q99742 590 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 DCAF13Q9NV06 445 aaKnown RBP17.86■□□□□ 0.45
UPF3A-211ENST00000618700 ADPRHL2Q9NX46 363 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 SLC13A4Q9UKG4 626 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 PRDM4Q9UKN5 801 aa17.86■□□□□ 0.45
UPF3A-211ENST00000618700 FAM47E-STBD1D6RA91 191 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 M0R3H8 397 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 SUSD5O60279 629 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 GMNNO75496 209 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 ATP6V1B2P21281 511 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 RYKP34925 604 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 GFRA1P56159 465 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 RGS8P57771 180 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-211ENST00000618700 SELENOWP63302 87 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 MS4A2Q01362 244 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 FOXF1Q12946 379 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 LCN8Q6JVE9 175 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 LACC1Q8IV20 430 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 GHDCQ8N2G8 530 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 GTPBP8Q8N3Z3 284 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-211ENST00000618700 OR4D11Q8NGI4 311 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 POC1BQ8TC44 478 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 ST8SIA1Q92185 356 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF407Q9C0G0 2248 aa17.85■□□□□ 0.45
UPF3A-211ENST00000618700 MMADHCQ9H3L0 296 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-211ENST00000618700 RPH3AQ9Y2J0 694 aaPredicted RBP17.85■□□□□ 0.45
UPF3A-211ENST00000618700 FREM3P0C091 2139 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 TRGV5A0A0B4J1U4 118 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 ACOT8O14734 319 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 WISP1O95388 367 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 ZNF682O95780 498 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 EDN3P14138 238 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 UQCRBP14927 111 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 TCEA1P23193 301 aaKnown RBP17.84■□□□□ 0.45
UPF3A-211ENST00000618700 PSMA4P25789 261 aaKnown RBP17.84■□□□□ 0.45
UPF3A-211ENST00000618700 HOXC5Q00444 222 aa17.84■□□□□ 0.45
UPF3A-211ENST00000618700 NPTX1Q15818 432 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms