RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DUSP22Q9NRW4 184 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ACSS1Q9NUB1 689 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 PARPBPQ9NWS1 579 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 GIN1Q9NXP7 522 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 NTMQ9P121 344 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 RAB21Q9UL25 225 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 B3GALT5Q9Y2C3 310 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 TMED5Q9Y3A6 229 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ANK3Q12955 4377 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 CIB4A0PJX0 185 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 DPRXA6NFQ7 191 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 VSTM5A8MXK1 200 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TMEM114B3SHH9 223 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 B4DXG7 233 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TRIM49D1C9J1S8 452 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 NPIPB8E9PQR5 432 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 SLC28A1O00337 649 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ANKRD28O15084 1053 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ERLIN1O75477 346 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 KCNK2O95069 426 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PGM3O95394 542 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CHEK2O96017 543 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 AK1P00568 194 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PGRP06401 933 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ERCC1P07992 297 aaPredicted RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 LINGO3P0C6S8 592 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TSPAN8P19075 237 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 COX5AP20674 150 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PRPH2P23942 346 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 SFTPDP35247 375 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 MAP3K8P41279 467 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CLK1P49759 484 aaKnown RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 PDLIM4P50479 330 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PRKAG1P54619 331 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 POU6F2P78424 691 aaPredicted RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 RELBQ01201 579 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 BTKQ06187 659 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 RASGEF1BQ0VAM2 473 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 HSPB3Q12988 150 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TP53BP2Q13625 1128 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CBFBQ13951 182 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PDK3Q15120 406 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 C11orf91Q3C1V1 193 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TMEM176BQ3YBM2 270 aaPredicted RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 UNC50Q53HI1 259 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 SLC25A53Q5H9E4 307 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CFAP157Q5JU67 520 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 WDR93Q6P2C0 686 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ZDHHC24Q6UX98 284 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TIFABQ6ZNK6 161 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 SZRD1Q7Z422 152 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 RFLNBQ8N5W9 214 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 EIF1ADQ8N9N8 165 aaKnown RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 KBTBD8Q8NFY9 601 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 OR56A1Q8NGH5 318 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 OR4C3Q8NH37 302 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 FAM110BQ8TC76 370 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PHOSPHO1Q8TCT1 267 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ADAMTS15Q8TE58 950 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TMEM234Q8WY98 164 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.57□□□□□ -1.521e-18■■■■■ 152.4
CUX1-220ENST00000607092 ST8SIA1Q92185 356 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 JADE3Q92613 823 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PPCDCQ96CD2 204 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 APIPQ96GX9 242 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 SH3YL1Q96HL8 342 aaPredicted RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 DMRTB1Q96MA1 342 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 FMO2Q99518 471 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CCT7Q99832 543 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PIMREGQ9BSJ6 248 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 INPP5KQ9BT40 448 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 C19orf24Q9BVV8 132 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 BTBD2Q9BX70 525 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 CACNG6Q9BXT2 260 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 EBPLQ9BY08 206 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PARD6BQ9BYG5 372 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 TMEM185BQ9H7F4 350 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ZFAND3Q9H8U3 227 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 MID1IP1Q9NPA3 183 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ATAD3AQ9NVI7 634 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ASB6Q9NWX5 421 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 NINJ2Q9NZG7 142 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 DCDC2Q9UHG0 476 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 MID2Q9UJV3 735 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ZNF225Q9UK10 706 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PRDM4Q9UKN5 801 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 FAF1Q9UNN5 650 aaPredicted RBP5.57□□□□□ -1.52
CUX1-220ENST00000607092 FREM1Q5H8C1 2179 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 ALPK2Q86TB3 2170 aa5.57□□□□□ -1.52
CUX1-220ENST00000607092 PRR14LQ5THK1 2151 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 PKD1L1Q8TDX9 2849 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 IGHV4-30-2A0A087WSY4 118 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 A0A0A6YYJ9 748 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 LOC100289279A0A1B0GTE1 492 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 EXOC1LA0A1B0GW35 172 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 GXYLT2A0PJZ3 443 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 DUXAA6NLW8 204 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 CCT8L1PA6NM43 557 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 SHISA9B4DS77 424 aa5.56□□□□□ -1.52
CUX1-220ENST00000607092 SHISA8B8ZZ34 492 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms