RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CALML5Q9NZT1 146 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 KLF2Q9Y5W3 355 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 GPC6Q9Y625 555 aaPredicted RBP13.7□□□□□ -0.22
LIG1-219ENST00000600055 DOPEY1Q5JWR5 2465 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 ICE1Q9Y2F5 2266 aa13.7□□□□□ -0.22
LIG1-219ENST00000600055 ASH1LQ9NR48 2969 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 USP9YO00507 2555 aaPredicted RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 A0A0G2JPF8 293 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 A0A0J9YW62 118 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 TMEM247A6NEH6 219 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 HSPB2A8KAH6 182 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 EVPLLA8MZ36 301 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 HNRNPCL2B2RXH8 293 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 HNRNPCL3B7ZW38 293 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 EIF1AYO14602 144 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 HNRNPCL1O60812 293 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 NTN1O95631 604 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 IL2RAP01589 272 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 DBIP07108 87 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 HNRNPCL4P0DMR1 293 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 NID1P14543 1247 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 SFTPDP35247 375 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 EIF1P41567 113 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 AGFG1P52594 562 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 ZNF136P52737 540 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 SESN3P58005 492 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 RAC1P63000 192 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 HSPB2Q16082 182 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 MRPL2Q5T653 305 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 REP15Q6BDI9 236 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 SP5Q6BEB4 398 aaPredicted RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 ZNF787Q6DD87 383 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 ZNF836Q6ZNA1 936 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 GRAMD2AQ8IUY3 354 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 ATP6V1C2Q8NEY4 427 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 FIG4Q92562 907 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 PMM1Q92871 262 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 UCN2Q96RP3 112 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 SLC39A3Q9BRY0 314 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 PINK1Q9BXM7 581 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 RLIMQ9NVW2 624 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 DNAJB12Q9NXW2 375 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 CAPN7Q9Y6W3 813 aa13.69□□□□□ -0.22
LIG1-219ENST00000600055 PHF3Q92576 2039 aaKnown RBP13.69□□□□□ -0.22
LIG1-219ENST00000600055 GMNCA6NCL1 334 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CYSRT1A8MQ03 144 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 C5orf58C9J3I9 102 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 AP3D1O14617 1153 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 TNFSF11O14788 317 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 PGM3O95394 542 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 PGCP20142 388 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 ADH6P28332 368 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 EEFSECP57772 596 aaKnown RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 CDK6Q00534 326 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 FOXF2Q12947 444 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 GNA13Q14344 377 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 ADRM1Q16186 407 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CTU2Q2VPK5 515 aaKnown RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 MMEL1Q495T6 779 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 LIN52Q52LA3 116 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 SLC25A53Q5H9E4 307 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 POMZP3Q6PJE2 187 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CHMP1BQ7LBR1 199 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CMIPQ8IY22 773 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 LILRA2Q8N149 483 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CLIP4Q8N3C7 705 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 METTL25Q8N6Q8 603 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 POU5F2Q8N7G0 328 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 RELL2Q8NC24 303 aaPredicted RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 WNT2BQ93097 391 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 ADGRG7Q96K78 797 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 MRGPRX4Q96LA9 322 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 RSPO3Q9BXY4 272 aaPredicted RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 BCL2L10Q9HD36 194 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 EXOSC3Q9NQT5 275 aaKnown RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 MRGBPQ9NV56 204 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 FAM53CQ9NYF3 392 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 CORO2BQ9UQ03 480 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 ZNF443Q9Y2A4 671 aaPredicted RBP13.68□□□□□ -0.22
LIG1-219ENST00000600055 CHST2Q9Y4C5 530 aa13.68□□□□□ -0.22
LIG1-219ENST00000600055 HECTD1Q9ULT8 2610 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 FXYD1O00168 92 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ETV2O00321 342 aaPredicted RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 MRASO14807 208 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 RCBTB2O95199 551 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 GKN3PP0CG01 181 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 BMP5P22003 454 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ME2P23368 584 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ELK4P28324 431 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 ADSLP30566 484 aaPredicted RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 EIF1AXP47813 144 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 RPS3AP61247 264 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 EEF1A1P68104 462 aaKnown RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 TFF3Q07654 80 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 CYLC2Q14093 348 aaPredicted RBP13.67□□□□□ -0.22
LIG1-219ENST00000600055 SCARB2Q14108 478 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 PON3Q15166 354 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 MAPRE2Q15555 327 aa13.67□□□□□ -0.22
LIG1-219ENST00000600055 SGCBQ16585 318 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms