RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 BBIP1A8MTZ0 92 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 HNRNPCL2B2RXH8 293 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 HNRNPCL3B7ZW38 293 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 GTPBP1O00178 669 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 HNRNPCL1O60812 293 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 HNRNPCL4P0DMR1 293 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 PEPDP12955 493 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 PCBP3P57721 371 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 HPCAP84074 193 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 QPRTQ15274 297 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 GCNT6Q5T4J0 391 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 MRPL2Q5T653 305 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 RIPPLY2Q5TAB7 128 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 TMEM211Q6ICI0 200 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 NANOGP8Q6NSW7 305 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 C8orf82Q6P1X6 216 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 LIX1LQ8IVB5 337 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 CMIPQ8IY22 773 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 POU5F2Q8N7G0 328 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 C9orf106Q8NAJ2 232 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 TNIP2Q8NFZ5 429 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 MBD3L2Q8NHZ7 208 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 NFKBIDQ8NI38 313 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 WDR60Q8WVS4 1066 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 LRRC58Q96CX6 371 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 FAM107BQ9H098 131 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 NANOGQ9H9S0 305 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 RLIMQ9NVW2 624 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 ALKBH4Q9NXW9 302 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 CALML5Q9NZT1 146 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 AP4B1Q9Y6B7 739 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 A1L4Q6 167 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 H3BML4 177 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 AP3D1O14617 1153 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 MRASO14807 208 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 SHOX2O60902 331 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 DBIP07108 87 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 THBS1P07996 1170 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 POU3F2P20265 443 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 ADH6P28332 368 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 TIMP3P35625 211 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 ZNF41P51814 821 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 SRYQ05066 204 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 RNF220Q5VTB9 566 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 CALHM3Q86XJ0 350 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 GRAMD2AQ8IUY3 354 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 CCDC71Q8IV32 467 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 ZZZ3Q8IYH5 903 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 EID3Q8N140 333 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 METTL25Q8N6Q8 603 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 OR52P1PQ8NH57 321 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 FBXO27Q8NI29 283 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 CALHM2Q9HA72 323 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 CORO2BQ9UQ03 480 aa17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 ZNF443Q9Y2A4 671 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 GPC6Q9Y625 555 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-221ENST00000599833 CLCA1A8K7I4 914 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 EVPLLA8MZ36 301 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 CCDC22O60826 627 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 PABPC4LP0CB38 370 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 COX4I1P13073 169 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 GRNP28799 593 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 ACAA2P42765 397 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 CRYBA2P53672 197 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 RAC1P63000 192 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 CDK6Q00534 326 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 CBFBQ13951 182 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 MAPRE2Q15555 327 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 RABL3Q5HYI8 236 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 XKRXQ6PP77 449 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 MAMDC2Q7Z304 686 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 LACC1Q8IV20 430 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 CLIP4Q8N3C7 705 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 RP9Q8TA86 221 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 BBS10Q8TAM1 723 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 RCN3Q96D15 328 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 MRGPRX4Q96LA9 322 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 TRIB1Q96RU8 372 aa17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 GPATCH1Q9BRR8 931 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 NSRP1Q9H0G5 558 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 PLEKHB1Q9UF11 243 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-221ENST00000599833 H0Y3Z8 333 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 ADAMDEC1O15204 470 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 TGM6O95932 706 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 NPPAP01160 153 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 ETS2P15036 469 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 SLC6A2P23975 617 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 ELK4P28324 431 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 GCKP35557 465 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 EIF1P41567 113 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 ZNF136P52737 540 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 SESN3P58005 492 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 TFF3Q07654 80 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 EPS8Q12929 822 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 ART3Q13508 389 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 CYLC2Q14093 348 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 SCARB2Q14108 478 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 LIN52Q52LA3 116 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 HIST2H2BCQ6DN03 193 aa17.54■□□□□ 0.4
SHKBP1-221ENST00000599833 REEP3Q6NUK4 255 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms