RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FAM71CQ8NEG0 241 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 TNIP2Q8NFZ5 429 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 FBXO27Q8NI29 283 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 BBS10Q8TAM1 723 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 POC1BQ8TC44 478 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 ST8SIA1Q92185 356 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SMPDL3BQ92485 455 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 WNT2BQ93097 391 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 SH3GL1Q99961 368 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 TMEM38AQ9H6F2 299 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 BCL2L10Q9HD36 194 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 PAQR5Q9NXK6 330 aaPredicted RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 ZNF629Q9UEG4 869 aaPredicted RBP13.55□□□□□ -0.24
UPF1-202ENST00000594243 PRDM4Q9UKN5 801 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 CAPN7Q9Y6W3 813 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 DSPPQ9NZW4 1301 aa13.55□□□□□ -0.24
UPF1-202ENST00000594243 LOC100653049A0A140TA62 436 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CLDN24A6NM45 220 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 GJE1A6NN92 205 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 FBP2O00757 339 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 EIF1AYO14602 144 aaKnown RBP13.54□□□□□ -0.24
UPF1-202ENST00000594243 KRT34O76011 436 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 RCBTB2O95199 551 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 PGM3O95394 542 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 THBS1P07996 1170 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ARAFP10398 606 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ETS2P15036 469 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 SLC6A2P23975 617 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 GYS2P54840 703 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CLDN15P56746 228 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CLDN20P56880 219 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 GNGT1P63211 74 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CDK6Q00534 326 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 FOXF1Q12946 379 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CDSNQ15517 529 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 TOMM34Q15785 309 aaPredicted RBP13.54□□□□□ -0.24
UPF1-202ENST00000594243 SP5Q6BEB4 398 aaPredicted RBP13.54□□□□□ -0.24
UPF1-202ENST00000594243 REEP3Q6NUK4 255 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ESPNLQ6ZVH7 1005 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ZNF440Q8IYI8 595 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 LILRA2Q8N149 483 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 RP9Q8TA86 221 aaKnown RBP13.54□□□□□ -0.24
UPF1-202ENST00000594243 ZNF563Q8TA94 476 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 MAL2Q969L2 176 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ZFP3Q96NJ6 502 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 NPAS1Q99742 590 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 KLHDC3Q9BQ90 382 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CPPED1Q9BRF8 314 aaPredicted RBP13.54□□□□□ -0.24
UPF1-202ENST00000594243 FAM107BQ9H098 131 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 KCNJ16Q9NPI9 418 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 SERINC1Q9NRX5 453 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 GID8Q9NWU2 228 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 CLCF1Q9UBD9 225 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 ZNF407Q9C0G0 2248 aa13.54□□□□□ -0.24
UPF1-202ENST00000594243 NBPF19A0A087WUL8 3843 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 KDM4EB2RXH2 506 aaPredicted RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 ETV2O00321 342 aaPredicted RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 DVL2O14641 736 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 NTN1O95631 604 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 UQCRBP14927 111 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 RYKP34925 604 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 EEF1A1P68104 462 aaKnown RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 RBBP4Q09028 425 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 TRMT5Q32P41 509 aaKnown RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 ZNF311Q5JNZ3 666 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 RPS26P11Q5JNZ5 115 aaPredicted RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 MRPL2Q5T653 305 aaKnown RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 EEF1A1P5Q5VTE0 462 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 OR2A2Q6IF42 318 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 P4HA3Q7Z4N8 544 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 GGNQ86UU5 652 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 VRK2Q86Y07 508 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 GRAMD2AQ8IUY3 354 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 NFKBIDQ8NI38 313 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 CNOT9Q92600 299 aaKnown RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 LRRC58Q96CX6 371 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 SPATA5L1Q9BVQ7 753 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 PINK1Q9BXM7 581 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 IKZF5Q9H5V7 419 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 ACER3Q9NUN7 267 aa13.53□□□□□ -0.24
UPF1-202ENST00000594243 DNAJB12Q9NXW2 375 aaKnown RBP13.53□□□□□ -0.24
UPF1-202ENST00000594243 FREM3P0C091 2139 aa13.52□□□□□ -0.24
UPF1-202ENST00000594243 CDHR4A6H8M9 788 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SLC22A20A6NK97 555 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 H0YC42 278 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 MRASO14807 208 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ADAMDEC1O15204 470 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SNX3O60493 162 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 PABPC4LP0CB38 370 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 DRD4P21917 467 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 CTSSP25774 331 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 FKBP2P26885 142 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 OPRM1P35372 400 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 APOBEC1P41238 236 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 EIF1AXP47813 144 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 IDH2P48735 452 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 TPD52P55327 224 aaPredicted RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 SESN3P58005 492 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 MTPNP58546 118 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SELENBP1Q13228 472 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms