RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 NKX2-6A6NCS4 301 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 HNRNPCL2B2RXH8 293 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 HNRNPCL3B7ZW38 293 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ANGPT2O15123 496 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ADAMDEC1O15204 470 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 SEC14L5O43304 696 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 HNRNPCL1O60812 293 aaKnown RBP17.39■□□□□ 0.37
SS18-208ENST00000577751 TGM6O95932 706 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 DBIP07108 87 aaKnown RBP17.39■□□□□ 0.37
SS18-208ENST00000577751 HNRNPCL4P0DMR1 293 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 IL11P20809 199 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ELK4P28324 431 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ADSLP30566 484 aaPredicted RBP17.39■□□□□ 0.37
SS18-208ENST00000577751 DLX5P56178 289 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 KLF10Q13118 480 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 GNA13Q14344 377 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 QPRTQ15274 297 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 SLC25A35Q3KQZ1 300 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 PRAMEF8Q5VWM4 474 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 PRAMEF7Q5VXH5 474 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 PLXDC2Q6UX71 529 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 CHMP1BQ7LBR1 199 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 PEX5LQ8IYB4 626 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 FBXO27Q8NI29 283 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 WDR60Q8WVS4 1066 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 SMPDL3BQ92485 455 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ADGRG7Q96K78 797 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 ZFP3Q96NJ6 502 aa17.39■□□□□ 0.37
SS18-208ENST00000577751 TMEM247A6NEH6 219 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 FAM90A27PA6NNH2 459 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 FBP2O00757 339 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CYP7B1O75881 506 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 IL18BPO95998 194 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 NID1P14543 1247 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 IL7RP16871 459 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 PGCP20142 388 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CTSSP25774 331 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CCR4P51679 360 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 RPS3AP61247 264 aaKnown RBP17.38■□□□□ 0.37
SS18-208ENST00000577751 ZNF787Q6DD87 383 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 DHDDSQ86SQ9 333 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 GRAMD2AQ8IUY3 354 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 LILRA2Q8N149 483 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 RELL2Q8NC24 303 aaPredicted RBP17.38■□□□□ 0.37
SS18-208ENST00000577751 ST8SIA1Q92185 356 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CNOT9Q92600 299 aaKnown RBP17.38■□□□□ 0.37
SS18-208ENST00000577751 MAL2Q969L2 176 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 ANKRD27Q96NW4 1050 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CPPED1Q9BRF8 314 aaPredicted RBP17.38■□□□□ 0.37
SS18-208ENST00000577751 ENKD1Q9H0I2 346 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 CORO2BQ9UQ03 480 aa17.38■□□□□ 0.37
SS18-208ENST00000577751 INTS1Q8N201 2190 aaKnown RBP17.38■□□□□ 0.37
SS18-208ENST00000577751 CYSRT1A8MQ03 144 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 EVPLLA8MZ36 301 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 DVL2O14641 736 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 ADAM11O75078 769 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 TMIGD3P0DMS9 266 aaPredicted RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 ARAFP10398 606 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 ME2P23368 584 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 SESN3P58005 492 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 RPS26P11Q5JNZ5 115 aaPredicted RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 MRPL2Q5T653 305 aaKnown RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 ESPNLQ6ZVH7 1005 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 OR52P1PQ8NH57 321 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 ZNF845Q96IR2 970 aaPredicted RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 CGREF1Q99674 301 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 PINK1Q9BXM7 581 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 ACER3Q9NUN7 267 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 PAQR5Q9NXK6 330 aaPredicted RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 DNAJB12Q9NXW2 375 aaKnown RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.37■□□□□ 0.37
SS18-208ENST00000577751 ZNF175Q9Y473 711 aa17.37■□□□□ 0.37
SS18-208ENST00000577751 A0A0J9YW62 118 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 SLC22A20A6NK97 555 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 EIF1AYO14602 144 aaKnown RBP17.36■□□□□ 0.37
SS18-208ENST00000577751 PGM3O95394 542 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 OPN1LWP04000 364 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 THBS1P07996 1170 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 IGFBP2P18065 325 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 SHC1P29353 583 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 OPRM1P35372 400 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 SLC6A8P48029 635 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 SEC24CP53992 1094 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 EEF1A1P68104 462 aaKnown RBP17.36■□□□□ 0.37
SS18-208ENST00000577751 FOXF2Q12947 444 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 NFYCQ13952 458 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 COQ5Q5HYK3 327 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 VRK2Q86Y07 508 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 OR10D3Q8NH80 312 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 TMEM234Q8WY98 164 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 FIG4Q92562 907 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 KLHL15Q96M94 604 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 TMEM38AQ9H6F2 299 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 TMEM185BQ9H7F4 350 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 NPDC1Q9NQX5 325 aaPredicted RBP17.36■□□□□ 0.37
SS18-208ENST00000577751 CHST2Q9Y4C5 530 aa17.36■□□□□ 0.37
SS18-208ENST00000577751 CDHR4A6H8M9 788 aa17.35■□□□□ 0.37
SS18-208ENST00000577751 FAAHO00519 579 aa17.35■□□□□ 0.37
SS18-208ENST00000577751 SLC22A2O15244 555 aa17.35■□□□□ 0.37
SS18-208ENST00000577751 HNRNPRO43390 633 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms