RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CAMKK1Q8N5S9 505 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GDPD1Q8N9F7 314 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 OR13C2Q8NGS9 318 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 CNOT9Q92600 299 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 TOE1Q96GM8 510 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 ABHD8Q96I13 439 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GAS2L1Q99501 681 aaPredicted RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 TIMP4Q99727 224 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 LMF2Q9BU23 707 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 REPIN1Q9BWE0 567 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 MED20Q9H944 212 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 CYP8B1Q9UNU6 501 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 POLHQ9Y253 713 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 A0A0B4J2E0 115 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 A0A1B0GX12 115 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 ZC3H12DA2A288 527 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 FAM86C2PA6NEL3 165 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 POLR1CO15160 346 aaPredicted RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 SEC14L5O43304 696 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 CHP2O43745 196 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 PTP4A3O75365 173 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 RFPL3O75679 317 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GALP22466 123 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 FOXK2Q01167 660 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SCN1BQ07699 218 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 C1orf61Q13536 156 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GPR50Q13585 617 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 PDZK1Q5T2W1 519 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 AGAP6Q5VW22 663 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 MARCH9Q86YJ5 346 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GRAMD2AQ8IUY3 354 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 NEIL3Q8TAT5 605 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 PTP4A1Q93096 173 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 KISS1RQ969F8 398 aaPredicted RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 KIAA1143Q96AT1 154 aaPredicted RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 AGAP4Q96P64 663 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 HCAR1Q9BXC0 346 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 MFRPQ9BY79 579 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 ISG20L2Q9H9L3 353 aaKnown RBP9.32□□□□□ -0.92
VPS53-220ENST00000576149 NPAP1Q9NZP6 1156 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 FLRT3Q9NZU0 649 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 GRIP1Q9Y3R0 1128 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SCN2AQ99250 2005 aa9.32□□□□□ -0.92
VPS53-220ENST00000576149 SHISA3A0PJX4 238 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 CSF3P09919 207 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 SAGP10523 405 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 EMDP50402 254 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 PPP3R1P63098 170 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZC3H14Q6PJT7 736 aaKnown RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 TMEM91Q6ZNR0 172 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 MCATQ8IVS2 390 aaKnown RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 C19orf47Q8N9M1 422 aaKnown RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 SLC37A3Q8NCC5 494 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ATP6V1C2Q8NEY4 427 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 GRHL3Q8TE85 626 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZDHHC1Q8WTX9 485 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ARSGQ96EG1 525 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 NEDD4LQ96PU5 975 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZNF426Q9BUY5 554 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ALG8Q9BVK2 526 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 IFT27Q9BW83 186 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 FOLH1BQ9HBA9 442 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 BABAM2Q9NXR7 383 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 A0A1B0GWA3 101 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 SLC22A31A6NKX4 558 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 C2CD4DB7Z1M9 353 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 PRR23D1E9PI22 279 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 HCN1O60741 890 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 TMCC2O75069 709 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ADAM11O75078 769 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 IGKV1D-16P01601 117 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 PRR23D2P0DMB1 279 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 RAC2P15153 192 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ACAA2P42765 397 aaKnown RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 RFX3P48380 749 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 OR2B6P58173 313 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ASAH1Q13510 395 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 GALEQ14376 348 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 INSL4Q14641 139 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZNHIT3Q15649 155 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 KCNJ8Q15842 424 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 PRTGQ2VWP7 1150 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZNF362Q5T0B9 420 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 NCCRP1Q6ZVX7 275 aaPredicted RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 UBQLNLQ8IYU4 475 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 TMEM99Q8N816 258 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ZNF614Q8N883 585 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 AVL9Q8NBF6 648 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 OR4N2Q8NGD1 307 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 RIT1Q92963 219 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 PTCHD1Q96NR3 888 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 TEAD3Q99594 435 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 ATF6BQ99941 703 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 SOSTQ9BQB4 213 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 RBCK1Q9BYM8 510 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 DNAJB12Q9NXW2 375 aaKnown RBP9.31□□□□□ -0.92
VPS53-220ENST00000576149 COMMD3Q9UBI1 195 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 SLC35A3Q9Y2D2 325 aa9.31□□□□□ -0.92
VPS53-220ENST00000576149 TRAV27A0A087WT01 109 aa9.3□□□□□ -0.92
VPS53-220ENST00000576149 A0A0A6YYC8 382 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms