RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ELK4P28324 431 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 CASP9P55211 416 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 CLDN15P56746 228 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 CLDN20P56880 219 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 KRTAP10-9P60411 292 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 RAC1P63000 192 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PPP2R2AP63151 447 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SIRPAP78324 504 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SORDQ00796 357 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 FOXF1Q12946 379 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 FOXF2Q12947 444 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 GNA13Q14344 377 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PON3Q15166 354 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TMEM44Q2T9K0 475 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PLPPR5Q32ZL2 321 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TTMPQ5BVD1 217 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 C6orf10Q5SRN2 563 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PDZK1Q5T2W1 519 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 FBXW10Q5XX13 1052 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 DNAJC14Q6Y2X3 702 aaPredicted RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 MSANTD1Q6ZTZ1 278 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 ESPNLQ6ZVH7 1005 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 EIF3MQ7L2H7 374 aaKnown RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 LUZP2Q86TE4 346 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 RNF130Q86XS8 419 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 ZZZ3Q8IYH5 903 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 METTL25Q8N6Q8 603 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 OR5W2Q8NH69 310 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 OR2V1Q8NHB1 315 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TMEM234Q8WY98 164 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 FIG4Q92562 907 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 RAB8BQ92930 207 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 ROPN1LQ96C74 230 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 REXO5Q96IC2 774 aaKnown RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 OR52B2Q96RD2 323 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SH3GL2Q99962 352 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 RBM24Q9BX46 236 aaKnown RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 ZNF350Q9GZX5 532 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SERHL2Q9H4I8 314 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 FANCFQ9NPI8 374 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TIGARQ9NQ88 270 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 TCF7L2Q9NQB0 619 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 PROCRQ9UNN8 238 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 LIPT1Q9Y234 373 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 SLC35A3Q9Y2D2 325 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 EMC9Q9Y3B6 208 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 L3MBTL1Q9Y468 752 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 GPC6Q9Y625 555 aaPredicted RBP7.29□□□□□ -1.24
VPS53-214ENST00000572607 EML6Q6ZMW3 1958 aa7.29□□□□□ -1.24
VPS53-214ENST00000572607 NIPBLQ6KC79 2804 aaeCLIP7.28□□□□□ -1.24
VPS53-214ENST00000572607 DNAJC13O75165 2243 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 VPS13CQ709C8 3753 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 A0A1W2PNV4 684 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 TUBAL3A6NHL2 446 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 NPIPB9F8W1W9 429 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 H0YC42 278 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 KIAA0513O60268 411 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 FCMRO60667 390 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 UGT2B17O75795 530 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GSNP06396 782 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GUSBP08236 651 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 LINGO3P0C6S8 592 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 UQCRBP14927 111 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 H2AFXP16104 143 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 PGCP20142 388 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 IL12AP29459 219 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 MAGEA8P43361 318 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 KCNJ5P48544 419 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 POLR2JP52435 117 aaKnown RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 SUCLG1P53597 346 aaKnown RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 TPD52P55327 224 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 DLX5P56178 289 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 CTBP2P56545 445 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 PHC1P78364 1004 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 IRX1P78414 480 aaPredicted RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 SELENBP1Q13228 472 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 DOC2BQ14184 412 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 QPRTQ15274 297 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ZNF141Q15928 474 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 TIGD2Q4W5G0 525 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS53-214ENST00000572607 SAMD5Q5TGI4 173 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 HBMQ6B0K9 141 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GTF2IRD2BQ6EKJ0 949 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 TYW3Q6IPR3 259 aaKnown RBP7.28□□□□□ -1.24
VPS53-214ENST00000572607 HEPHL1Q6MZM0 1159 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 POMZP3Q6PJE2 187 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 CBLN3Q6UW01 205 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 EPGNQ6UW88 154 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 PLXDC2Q6UX71 529 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 MAVSQ7Z434 540 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GTF2IRD2Q86UP8 949 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 GGNQ86UU5 652 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 LILRA2Q8N149 483 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ZNF619Q8N2I2 560 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 PLPP7Q8NBV4 271 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 OR10D3Q8NH80 312 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 FBXO27Q8NI29 283 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 ZNF563Q8TA94 476 aa7.28□□□□□ -1.24
VPS53-214ENST00000572607 FNDC9Q8TBE3 224 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms