RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TMEM107Q6UX40 140 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 MRGPRX4Q96LA9 322 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 BBS4Q96RK4 519 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 CPNE1Q99829 537 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 DDX18Q9NVP1 670 aaKnown RBP15.68■□□□□ 0.1
CLK3-227ENST00000570296 PPIAL4AQ9Y536 164 aa15.68■□□□□ 0.1
CLK3-227ENST00000570296 PDLIM1O00151 329 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 WNT11O96014 354 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 AVPP01185 164 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 GCH1P30793 250 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 SLC1A3P43003 542 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 ARL4CP56559 192 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 GGTA1PQ4G0N0 100 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 RAPH1Q70E73 1250 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 FBXO36Q8NEA4 188 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 ATP6V1C2Q8NEY4 427 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 KCNS3Q9BQ31 491 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 RACGAP1Q9H0H5 632 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 ZMAT3Q9HA38 289 aaKnown RBP15.67■□□□□ 0.1
CLK3-227ENST00000570296 DCTN4Q9UJW0 460 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 NOSIPQ9Y314 301 aaKnown RBP15.67■□□□□ 0.1
CLK3-227ENST00000570296 ACTL7BQ9Y614 415 aa15.67■□□□□ 0.1
CLK3-227ENST00000570296 A0A1W2PNR3 127 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 A0A1W2PQD3 144 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 MYO1GB0I1T2 1018 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 GAAP10253 952 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 HPGDP15428 266 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 IVDP26440 423 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 LCN1P31025 176 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 FOXG1P55316 489 aaPredicted RBP15.66■□□□□ 0.1
CLK3-227ENST00000570296 PRPS1P60891 318 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 TRAF3Q13114 568 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 ABLIM2Q6H8Q1 611 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 IKBIPQ70UQ0 350 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 SYT14Q8NB59 555 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 PIK3R3Q92569 461 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 CDKL2Q92772 493 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 KATNB1Q9BVA0 655 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 SLC52A3Q9NQ40 469 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 G6PC2Q9NQR9 355 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 UBQLN4Q9NRR5 601 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 FARSBQ9NSD9 589 aaKnown RBP15.66■□□□□ 0.1
CLK3-227ENST00000570296 ACSS1Q9NUB1 689 aaPredicted RBP15.66■□□□□ 0.1
CLK3-227ENST00000570296 NFU1Q9UMS0 254 aa15.66■□□□□ 0.1
CLK3-227ENST00000570296 SCDO00767 359 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 PDYNP01213 254 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 JUNP05412 331 aaKnown RBP15.65■□□□□ 0.1
CLK3-227ENST00000570296 SAGP10523 405 aaPredicted RBP15.65■□□□□ 0.1
CLK3-227ENST00000570296 PRTN3P24158 256 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 FPR2P25090 351 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 CRABP2P29373 138 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 TYK2P29597 1187 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 NCBP2P52298 156 aaKnown RBP eCLIP15.65■□□□□ 0.19e-7■■■■□ 24.2
CLK3-227ENST00000570296 IL1RL1Q01638 556 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 TGFBR3Q03167 851 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 TRADDQ15628 312 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 VPS26BQ4G0F5 336 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 CMC1Q7Z7K0 106 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 NANPQ8TBE9 248 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 GPR151Q8TDV0 419 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 MMP27Q9H306 513 aa15.65■□□□□ 0.1
CLK3-227ENST00000570296 CXorf49A8MYA2 514 aaPredicted RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 hCG_2039718K7EN88 272 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 GPR171O14626 319 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 CRYAAP02489 173 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 IFI6P09912 130 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 PRKCAP17252 672 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 GPR6P46095 362 aaPredicted RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 SUMO3P55854 103 aaPredicted RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 ZNF117Q03924 483 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 FASTKD3Q14CZ7 662 aaKnown RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 CD226Q15762 336 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 KLHL24Q6TFL4 600 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 RBMS3Q6XE24 437 aaKnown RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 ZCCHC24Q8N2G6 241 aaKnown RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 MMGT1Q8N4V1 131 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 SELENOMQ8WWX9 145 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 HOXB13Q92826 284 aaPredicted RBP15.64■□□□□ 0.09
CLK3-227ENST00000570296 ELP4Q96EB1 424 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 MS4A14Q96JA4 679 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 DOK1Q99704 481 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 VPS29Q9UBQ0 182 aa15.64■□□□□ 0.09
CLK3-227ENST00000570296 IGHV1-18A0A0C4DH31 117 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 LYNX1G3V0Z9 82 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 PCDH7O60245 1069 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 MRPL33O75394 65 aaKnown RBP15.63■□□□□ 0.09
CLK3-227ENST00000570296 NKX2-2O95096 273 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 NUDT14O95848 222 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 NUDT17P0C025 328 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 LYNX1P0DP58 116 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 MAP3K8P41279 467 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 ZNF75DP51815 510 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 PDIA2Q13087 525 aaKnown RBP15.63■□□□□ 0.09
CLK3-227ENST00000570296 ADRM1Q16186 407 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 VHLLQ6RSH7 139 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 MTERF4Q7Z6M4 381 aaKnown RBP15.63■□□□□ 0.09
CLK3-227ENST00000570296 OR52E4Q8NGH9 312 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 OR6Y1Q8NGX8 325 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 ARL8AQ96BM9 186 aa15.63■□□□□ 0.09
CLK3-227ENST00000570296 SLC38A2Q96QD8 506 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms