RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ZNF808Q8N4W9 903 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 C11orf65Q8NCR3 313 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 OR8J3Q8NGG0 315 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ZPLD1Q8TCW7 415 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ITLN2Q8WWU7 325 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 SMPDL3BQ92485 455 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 CNOT9Q92600 299 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 RND1Q92730 232 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 MRGPRX4Q96LA9 322 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 TRIB1Q96RU8 372 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 CCT8L2Q96SF2 557 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 TUBA1CQ9BQE3 449 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 KAT8Q9H7Z6 458 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 NANOGQ9H9S0 305 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 DNAJB12Q9NXW2 375 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 COQ3Q9NZJ6 369 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF232Q9UNY5 417 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF443Q9Y2A4 671 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 IFT52Q9Y366 437 aa12.27□□□□□ -0.45
SHMT2-228ENST00000557302 GPC6Q9Y625 555 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 UTP20O75691 2785 aaKnown RBP12.27□□□□□ -0.45
SHMT2-228ENST00000557302 SEC14L5O43304 696 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 DNAJA2O60884 412 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 EPPINO95925 133 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ETS2P15036 469 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 PRKCAP17252 672 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 AGAP20933 346 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ME2P23368 584 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 PSMA4P25789 261 aaKnown RBP12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ELK4P28324 431 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ADH6P28332 368 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 RYKP34925 604 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 SLC6A8P48029 635 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 EEFSECP57772 596 aaKnown RBP12.26□□□□□ -0.45
SHMT2-228ENST00000557302 PLAURQ03405 335 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ZSWIM7Q19AV6 140 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 RABL3Q5HYI8 236 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF311Q5JNZ3 666 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 NSUN5P2Q63ZY6 315 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 XKRXQ6PP77 449 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 CHMP1BQ7LBR1 199 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 NET1Q7Z628 596 aaPredicted RBP12.26□□□□□ -0.45
SHMT2-228ENST00000557302 SERPINA11Q86U17 422 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 LACC1Q8IV20 430 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF440Q8IYI8 595 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 HIPK4Q8NE63 616 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 OR10Q1Q8NGQ4 319 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 OR10A6Q8NH74 314 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 FBXO27Q8NI29 283 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 POC1BQ8TC44 478 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 TMEM234Q8WY98 164 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ST8SIA1Q92185 356 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 CMTM5Q96DZ9 223 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 NPAS1Q99742 590 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 SPATA5L1Q9BVQ7 753 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 SPATA9Q9BWV2 254 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ARMC7Q9H6L4 198 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 CALHM2Q9HA72 323 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 ANGPT4Q9Y264 503 aa12.26□□□□□ -0.45
SHMT2-228ENST00000557302 PCNX3Q9H6A9 2034 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 CDHR4A6H8M9 788 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 CD8B2A6NJW9 211 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 CLCA1A8K7I4 914 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ETV2O00321 342 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 AIM2O14862 343 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 SHOX2O60902 331 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 DCTN3O75935 186 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 NTN1O95631 604 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 PABPC4LP0CB38 370 aaKnown RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 UQCRBP14927 111 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 SUCLG1P53597 346 aaKnown RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 CLDN20P56880 219 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 SESN3P58005 492 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RPS3AP61247 264 aaKnown RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RAC1P63000 192 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 EEF1A1P68104 462 aaKnown RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 SLC25A53Q5H9E4 307 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RIPPLY2Q5TAB7 128 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 GKAP1Q5VSY0 366 aaPredicted RBP12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RNF220Q5VTB9 566 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 PTOV1Q86YD1 416 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ZZZ3Q8IYH5 903 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF563Q8TA94 476 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ASB5Q8WWX0 329 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 SDCCAG3Q96C92 435 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 PSMG3-AS1Q96PY0 264 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF607Q96SK3 696 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ECSITQ9BQ95 431 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 TMEM185BQ9H7F4 350 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 EFCAB1Q9HAE3 211 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RLIMQ9NVW2 624 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 ADAM21Q9UKJ8 722 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 RNF6Q9Y252 685 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 NAV2Q8IVL1 2488 aa12.25□□□□□ -0.45
SHMT2-228ENST00000557302 A1L4Q6 167 aa12.24□□□□□ -0.45
SHMT2-228ENST00000557302 CFAP73A6NFT4 308 aa12.24□□□□□ -0.45
SHMT2-228ENST00000557302 KDM4EB2RXH2 506 aaPredicted RBP12.24□□□□□ -0.45
SHMT2-228ENST00000557302 H0YC42 278 aa12.24□□□□□ -0.45
SHMT2-228ENST00000557302 EIF1AYO14602 144 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms