RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 ICOSLGO75144 302 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 UTS2O95399 124 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 PPICP45877 212 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC15A1P46059 708 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 CCR4P51679 360 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SMSP52788 366 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 TUBA3CQ13748 450 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 CTF1Q16619 201 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 ALG10BQ5I7T1 473 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SYT6Q5T7P8 510 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 THSD4Q6ZMP0 1018 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SVOPQ8N4V2 548 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 BBS1Q8NFJ9 593 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 OR51A7Q8NH64 312 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF420Q8TAQ5 688 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 RELTQ969Z4 430 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 C8orf44Q96CB5 159 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 YIPF6Q96EC8 236 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 DNAJA3Q96EY1 480 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SH3YL1Q96HL8 342 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 LCORQ96JN0 433 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF582Q96NG8 517 aaPredicted RBP11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC46A1Q96NT5 459 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF559Q9BR84 538 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 FBXO4Q9UKT5 387 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 CARD8Q9Y2G2 431 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 EXPH5Q8NEV8 1989 aa11.71□□□□□ -0.54
VIPAS39-206ENST00000553888 FAM183AA6NL82 134 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 IDSB3KWA1 339 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 D6RAR5 112 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 WISP1O95388 367 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 HSMCR30P0CW71 290 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 DBTP11182 482 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 TGFBR2P37173 567 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 MPLP40238 635 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 VBP1P61758 197 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 CSNK2BP67870 215 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 EFNB1P98172 346 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 ANGPT1Q15389 498 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 GXYLT1Q4G148 440 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 KLHL26Q53HC5 615 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC35F1Q5T1Q4 408 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 SMARCD3Q6STE5 483 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 B3GLCTQ6Y288 498 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 PHOSPHO1Q8TCT1 267 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 BPIFA2Q96DR5 249 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 POLDIP3Q9BY77 421 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 ENPP5Q9UJA9 477 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 SRPK3Q9UPE1 567 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 R4GN57 208 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 POLR1CO15160 346 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 MPZL2O60487 215 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 REM1O75628 298 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 GRK5P34947 590 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 TMBIM6P55061 237 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 NFATC3Q12968 1075 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 GRAMD2AQ8IUY3 354 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 ZBTB44Q8NCP5 570 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 WDR36Q8NI36 951 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 CEP76Q8TAP6 659 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 WWTR1Q9GZV5 400 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 OR52D1Q9H346 318 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 HHATLQ9HCP6 504 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 IL20Q9NYY1 176 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 UNC119BA6NIH7 251 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 DYRK3O43781 588 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF354AO60765 605 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 FMO6PO60774 539 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 NOL3O60936 208 aaKnown RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 SAGP10523 405 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 CCNA2P20248 432 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 NCS1P62166 190 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 SOWAHCQ53LP3 525 aaPredicted RBP11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 TMEM201Q5SNT2 666 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 UBE2UQ5VVX9 321 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 RABEPKQ7Z6M1 372 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 PPP1R3BQ86XI6 285 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 OR5M3Q8NGP4 307 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 OR1N1Q8NGS0 311 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 NDNFQ8TB73 568 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 FANK1Q8TC84 345 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 OTULINQ96BN8 352 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 MED20Q9H944 212 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 EML6Q6ZMW3 1958 aa11.7□□□□□ -0.54
VIPAS39-206ENST00000553888 ALPK2Q86TB3 2170 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 ZC3H12DA2A288 527 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 SH3D21A4FU49 640 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 FRG2CA6NGY1 282 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF701M0R085 212 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 CHP2O43745 196 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 IL33O95760 270 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 HEXBP07686 556 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 CD36P16671 472 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 TBXA2RP21731 343 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 STAT5AP42229 794 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 TEKQ02763 1124 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 IRF3Q14653 427 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 MED22Q15528 200 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 TBCEQ15813 527 aaPredicted RBP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms