RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ABCA1O95477 2261 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 TMEM114B3SHH9 223 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 H3BNH8 94 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 COPEO14579 308 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 LSM1O15116 133 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 SCAMP2O15127 329 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 AKAP10O43572 662 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 TRIM13O60858 407 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 GCM2O75603 506 aaPredicted RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 PLAUP00749 431 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 IFNA2P01563 188 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 OPN1LWP04000 364 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 HMGN2P05204 90 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 KRT16P08779 473 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ATP6V1C1P21283 382 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 HPCAL1P37235 193 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ATP5J2P56134 94 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 CARD18P57730 90 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 RPS4XP62701 263 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 ZNF117Q03924 483 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 FOXF1Q12946 379 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 CAPRIN1Q14444 709 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 P2RY6Q15077 328 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 KLHL26Q53HC5 615 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 TMEM201Q5SNT2 666 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 SFRP5Q5T4F7 317 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 CCNJQ5T5M9 372 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 CDC73Q6P1J9 531 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 SLC43A2Q8N370 569 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 NATD1Q8N6N6 113 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 CCDC63Q8NA47 563 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 PSMA8Q8TAA3 256 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 FBXO30Q8TB52 745 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ABHD3Q8WU67 409 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 TMEM158Q8WZ71 300 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 JADE3Q92613 823 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 AKAP1Q92667 903 aaKnown RBP eCLIP6.78□□□□□ -1.32
NEK3-201ENST00000550331 FBXW5Q969U6 566 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 S100PBPQ96BU1 408 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 TUBB1Q9H4B7 451 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ESRP2Q9H6T0 727 aaKnown RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 C12orf49Q9H741 205 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 SIRT3Q9NTG7 399 aaPredicted RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 FBXO34Q9NWN3 711 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 BAIAP2L1Q9UHR4 511 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ATP6V1HQ9UI12 483 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ICAM5Q9UMF0 924 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 RNF115Q9Y4L5 304 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 DNAJC15Q9Y5T4 150 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 ACTL7BQ9Y614 415 aa6.78□□□□□ -1.32
NEK3-201ENST00000550331 GPC6Q9Y625 555 aaPredicted RBP6.78□□□□□ -1.32
NEK3-201ENST00000550331 MED12LQ86YW9 2145 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 USF3Q68DE3 2245 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 ROS1P08922 2347 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 OVOL3O00110 214 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 NPHS1O60500 1241 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 LYPLA1O75608 230 aaPredicted RBP6.77□□□□□ -1.33
NEK3-201ENST00000550331 PRKD3O94806 890 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 NTN1O95631 604 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 NUDT14O95848 222 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 SHBGP04278 402 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 CD3EP07766 207 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 FGF4P08620 206 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 LINC00032P0C843 101 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 BCKDHAP12694 445 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 KRT4P19013 534 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 IL32P24001 234 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 MAPK1P28482 360 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 SHC1P29353 583 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 SFTPDP35247 375 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 P2RX1P51575 399 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 SELENBP1Q13228 472 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 LASP1Q14847 261 aaKnown RBP6.77□□□□□ -1.33
NEK3-201ENST00000550331 PCLAFQ15004 111 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 GALNTL6Q49A17 601 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 NCMAPQ5T1S8 102 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 PODNL1Q6PEZ8 512 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 CBLN3Q6UW01 205 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 DNAJC14Q6Y2X3 702 aaPredicted RBP6.77□□□□□ -1.33
NEK3-201ENST00000550331 FCRLAQ7L513 359 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 SSX8Q7RTT4 187 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 C10orf107Q8IVU9 208 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 TUSC5Q8IXB3 177 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 DDIASQ8IXT1 998 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 BANPQ8N9N5 519 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 OR56A1Q8NGH5 318 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 CLHC1Q8NHS4 586 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 KIF18AQ8NI77 898 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 RAB3IL1Q8TBN0 382 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 PHOSPHO1Q8TCT1 267 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 ADAMTS15Q8TE58 950 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 ZFP90Q8TF47 636 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 TWIST2Q8WVJ9 160 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 ROBO4Q8WZ75 1007 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 OR5P2Q8WZ92 322 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 HSD17B8Q92506 261 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 CDS1Q92903 461 aa6.77□□□□□ -1.33
NEK3-201ENST00000550331 KISS1RQ969F8 398 aaPredicted RBP6.77□□□□□ -1.33
NEK3-201ENST00000550331 OTUB1Q96FW1 271 aaPredicted RBP6.77□□□□□ -1.33
NEK3-201ENST00000550331 TRMT61AQ96FX7 289 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms