RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PGAM2P15259 253 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 RPS25P62851 125 aaKnown RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 SYT6Q5T7P8 510 aaPredicted RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 TCTN3Q6NUS6 607 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ULK3Q6PHR2 472 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ZNF440Q8IYI8 595 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 PIAS4Q8N2W9 510 aaPredicted RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 DNAJA4Q8WW22 397 aaPredicted RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 LOC105369274A0A096LPK9 316 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 LOC102723532A0A0G2JNH3 316 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 A0A1B0GVI7 797 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 UBL4AP11441 157 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 PRKXP51817 358 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ZP2Q05996 745 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 POU4F2Q12837 409 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 PAQR6Q6TCH4 344 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ZER1Q7Z7L7 766 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 OR4N4Q8N0Y3 316 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 C19orf47Q8N9M1 422 aaKnown RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 TOR1AIP2Q8NFQ8 470 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 NLGN4YQ8NFZ3 816 aaPredicted RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 OR51Q1Q8NH59 317 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ZNF582Q96NG8 517 aaPredicted RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 CACNG6Q9BXT2 260 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 ATP13A2Q9NQ11 1180 aa15.17■□□□□ 0.02
CUX1-213ENST00000549414 NUFIP1Q9UHK0 495 aaKnown RBP15.17■□□□□ 0.02
CUX1-213ENST00000549414 PTTG1O95997 202 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 MAOAP21397 527 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 SFTPDP35247 375 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 MLLT11Q13015 90 aaPredicted RBP15.16■□□□□ 0.02
CUX1-213ENST00000549414 ACSM3Q53FZ2 586 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 MAMDC2Q7Z304 686 aaPredicted RBP15.16■□□□□ 0.02
CUX1-213ENST00000549414 LAX1Q8IWV1 398 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 SLC35F2Q8IXU6 374 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 ZNF283Q8N7M2 679 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 CCDC32Q9BV29 185 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 ZNF224Q9NZL3 707 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.16■□□□□ 0.02
CUX1-213ENST00000549414 GRIP1Q9Y3R0 1128 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 TMEM14AQ9Y6G1 99 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 CLEC2LP0C7M8 214 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 NR4A2P43354 598 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 CLRN1P58418 232 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 RASGEF1BQ0VAM2 473 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 SCRN3Q0VDG4 424 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 PCM1Q15154 2024 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 GDF7Q7Z4P5 450 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 TMEM246Q9BRR3 403 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 NRSN2Q9GZP1 204 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 TMPRSS11EQ9UL52 423 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 BAIAP2Q9UQB8 552 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 A0A087WUU8 490 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 H7C1C5 153 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 TPD52L2O43399 206 aaKnown RBP15.16■□□□□ 0.02
CUX1-213ENST00000549414 TRIM23P36406 574 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 LCN6P62502 163 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 CRMP1Q14194 572 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 GPNMBQ14956 572 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 ZNF431Q8TF32 576 aaPredicted RBP15.16■□□□□ 0.02
CUX1-213ENST00000549414 MRGPRX1Q96LB2 322 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 CRB3Q9BUF7 120 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 ATG5Q9H1Y0 275 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 PIGUQ9H490 435 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 SEMA4GQ9NTN9 838 aa15.16■□□□□ 0.02
CUX1-213ENST00000549414 METTL21EPA6NDL7 271 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 C5orf51A6NDU8 294 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 LIM2P55344 173 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 ATXN7L3Q14CW9 347 aaPredicted RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 BTBD16Q32M84 506 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 SAXO2Q658L1 398 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 FAM83FQ8NEG4 500 aaPredicted RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 SETD6Q8TBK2 473 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 LMF1Q96S06 567 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 BABAM2Q9NXR7 383 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 UPB1Q9UBR1 384 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 DKKL1Q9UK85 242 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 RASD1Q9Y272 281 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 MYOFQ9NZM1 2061 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 EIF2DP41214 584 aaKnown RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 RPS15P62841 145 aaKnown RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 MEPCEQ7L2J0 689 aaKnown RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 ADAMTS18Q8TE60 1221 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 CNOT9Q92600 299 aaKnown RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 ELSPBP1Q96BH3 223 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 ZNF707Q96C28 371 aaPredicted RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 DHDHQ9UQ10 334 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 PPIL1Q9Y3C6 166 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 A0A1B0GWA3 101 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 OR2A25A4D2G3 310 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 CHRM4P08173 479 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 SLC1A3P43003 542 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 SNRPD2P62316 118 aaKnown RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 TRAM1Q15629 374 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 RAET1LQ5VY80 246 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 ACSM5Q6NUN0 579 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 FCAMRQ8WWV6 532 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 CPNE5Q9HCH3 593 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 DAPP1Q9UN19 280 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 OR2W5A6NFC9 320 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 JUNBP17275 347 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms