RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 PTGDR2Q9Y5Y4 395 aa11.33□□□□□ -0.6
USP28-212ENST00000544750 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 A0A1W2PQD3 144 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 CCDC151A5D8V7 595 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 VWC2LB2RUY7 222 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 H3BQF6 201 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 H7C417 338 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 RGS16O15492 202 aaPredicted RBP11.32□□□□□ -0.6
USP28-212ENST00000544750 PRKD3O94806 890 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 CHRNGP07510 517 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 FOXF1Q12946 379 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 CD226Q15762 336 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 EXOSC6Q5RKV6 272 aaKnown RBP11.32□□□□□ -0.6
USP28-212ENST00000544750 B3GLCTQ6Y288 498 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 ZCCHC23Q6ZST2 131 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 SSX8Q7RTT4 187 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 TRIM46Q7Z4K8 759 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 FAM168AQ92567 244 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 GIMAP5Q96F15 307 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 SH3YL1Q96HL8 342 aaPredicted RBP11.32□□□□□ -0.6
USP28-212ENST00000544750 REXO5Q96IC2 774 aaKnown RBP11.32□□□□□ -0.6
USP28-212ENST00000544750 RADILQ96JH8 1075 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 PSD2Q9BQI7 771 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 TUBB1Q9H4B7 451 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 MYNNQ9NPC7 610 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 TIGARQ9NQ88 270 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 NTMQ9P121 344 aa11.32□□□□□ -0.6
USP28-212ENST00000544750 RGS14O43566 566 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 NPHS1O60500 1241 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 KCNK2O95069 426 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 BPGMP07738 259 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 UROSP10746 265 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 ACP2P11117 423 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 ENPP1P22413 925 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 USF1P22415 310 aaPredicted RBP11.31□□□□□ -0.6
USP28-212ENST00000544750 IGHV1-2P23083 117 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 NTSP30990 170 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 EIF1P41567 113 aaKnown RBP11.31□□□□□ -0.6
USP28-212ENST00000544750 PRIM2P49643 509 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 LSM11P83369 360 aaKnown RBP eCLIP11.31□□□□□ -0.6
USP28-212ENST00000544750 BTKQ06187 659 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 SPOCK1Q08629 439 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 MPP2Q14168 576 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 RAB35Q15286 201 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 STK11Q15831 433 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 FAM120AOSQ5T036 256 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 LRIG3Q6UXM1 1119 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 RNF165Q6ZSG1 346 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 IL17RELQ6ZVW7 336 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 P2RY8Q86VZ1 359 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 MISPQ8IVT2 679 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 SLC43A2Q8N370 569 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 MUC15Q8N387 334 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 OR2T11Q8NH01 316 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 B4GALNT2Q8NHY0 566 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 GPR151Q8TDV0 419 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 ZNF75CPQ92670 426 aaPredicted RBP11.31□□□□□ -0.6
USP28-212ENST00000544750 ZNF524Q96C55 264 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 TRMOQ9BU70 441 aa11.31□□□□□ -0.6
USP28-212ENST00000544750 SSU72Q9NP77 194 aaKnown RBP11.31□□□□□ -0.6
USP28-212ENST00000544750 OR5H1A6NKK0 313 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 TMEM233B4DJY2 109 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 NPIPB8E9PQR5 432 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 ZNF195O14628 629 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 AZIN1O14977 448 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 PGRP06401 933 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 DHRS4L1P0CG22 281 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 PRPS2P11908 318 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 PRPH2P23942 346 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 LCN1P31025 176 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 GZMKP49863 264 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 ZNF117Q03924 483 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 RUNX1T1Q06455 604 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 KIAA0040Q15053 153 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 UGT3A2Q3SY77 523 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 TMEM176BQ3YBM2 270 aaPredicted RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 ARL13AQ5H913 290 aaPredicted RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 KANK2Q63ZY3 851 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 ZNF551Q7Z340 670 aaPredicted RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 ZNF433Q8N7K0 673 aaPredicted RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 CDRT4Q8N9R6 151 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 SLC16A11Q8NCK7 471 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 FBXO27Q8NI29 283 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 ZFP90Q8TF47 636 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 MSI2Q96DH6 328 aaKnown RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 MUCL1Q96DR8 90 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 PKNOX2Q96KN3 472 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 EQTNQ9NQ60 294 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 MIEF1Q9NQG6 463 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 RRAGDQ9NQL2 400 aaPredicted RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 UBQLN4Q9NRR5 601 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 MGAT4BQ9UQ53 548 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 WBP11Q9Y2W2 641 aaKnown RBP11.3□□□□□ -0.6
USP28-212ENST00000544750 DNAJC15Q9Y5T4 150 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 ACTL7BQ9Y614 415 aa11.3□□□□□ -0.6
USP28-212ENST00000544750 IGHV3-15A0A0B4J1V0 119 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 OIP5O43482 229 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 CYTIPO60759 359 aa11.29□□□□□ -0.6
USP28-212ENST00000544750 RSL1D1O76021 490 aaKnown RBP11.29□□□□□ -0.6
USP28-212ENST00000544750 FGF4P08620 206 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms