RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 PCNX1Q96RV3 2341 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 SYT5O00445 386 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 EIF1AYO14602 144 aaKnown RBP8.74□□□□□ -1.01
YBX3-212ENST00000542002 AP3D1O14617 1153 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 TNFSF11O14788 317 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 TNFSF13O75888 250 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 AQP8O94778 261 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 NUDT14O95848 222 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 IL2RAP01589 272 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 BCHEP06276 602 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 BMP2P12643 396 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 NID1P14543 1247 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 CTSSP25774 331 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 MAGEA8P43361 318 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 SEC24CP53992 1094 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 SESN3P58005 492 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 TXNL4AP83876 142 aaKnown RBP8.74□□□□□ -1.01
YBX3-212ENST00000542002 SF3B4Q15427 424 aaKnown RBP eCLIP8.74□□□□□ -1.018e-16■■■■■ 41.8
YBX3-212ENST00000542002 SLC25A53Q5H9E4 307 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 GCNT2Q8N0V5 402 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 CLIP4Q8N3C7 705 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 DPP10Q8N608 796 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 MEIOBQ8N635 442 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 METTL25Q8N6Q8 603 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 ATP6V1C2Q8NEY4 427 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 OR10D3Q8NH80 312 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 FNDC9Q8TBE3 224 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 C10orf82Q8WW14 230 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 TMEM19Q96HH6 336 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 PINK1Q9BXM7 581 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 RABEP2Q9H5N1 569 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 DNAJB12Q9NXW2 375 aaKnown RBP8.74□□□□□ -1.01
YBX3-212ENST00000542002 JKAMPQ9P055 326 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 ZNF629Q9UEG4 869 aaPredicted RBP8.74□□□□□ -1.01
YBX3-212ENST00000542002 TRIM33Q9UPN9 1127 aa8.74□□□□□ -1.01
YBX3-212ENST00000542002 SLC22A20A6NK97 555 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 CXCL13O43927 109 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 GCM2O75603 506 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 GKN3PP0CG01 181 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 TMIGD3P0DMS9 266 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 TROVE2P10155 538 aaKnown RBP eCLIP8.73□□□□□ -1.01
YBX3-212ENST00000542002 GPX2P18283 190 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 KLK2P20151 261 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 ADH6P28332 368 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 RYKP34925 604 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SFTPDP35247 375 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 EIF1P41567 113 aaKnown RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 ACAA2P42765 397 aaKnown RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 KIR2DL2P43627 348 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 EIF1AXP47813 144 aaKnown RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 CCR4P51679 360 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SUMO3P55854 103 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 EEF1A1P68104 462 aaKnown RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 IRX1P78414 480 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 KLF10Q13118 480 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 CBFBQ13951 182 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 PON3Q15166 354 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 TMEM176BQ3YBM2 270 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 MRPL2Q5T653 305 aaKnown RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 COMTD1Q86VU5 262 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 TMCO5AQ8N6Q1 288 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 TOR1AIP2Q8NFQ8 470 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 OR52P1PQ8NH57 321 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 OR2V1Q8NHB1 315 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 OSTF1Q92882 214 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 STARD4Q96DR4 205 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 DTNBP1Q96EV8 351 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 MRGPRX4Q96LA9 322 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 TM9SF2Q99805 663 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SPOCK3Q9BQ16 436 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 CPPED1Q9BRF8 314 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 CCDC106Q9BWC9 280 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SRXN1Q9BYN0 137 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 RNF122Q9H9V4 155 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 HHATLQ9HCP6 504 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 BCL2L10Q9HD36 194 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 A4GALTQ9NPC4 353 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 ACER3Q9NUN7 267 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 KLHL14Q9P2G3 628 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 P2RX2Q9UBL9 471 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SLC35A3Q9Y2D2 325 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 NDUFAF1Q9Y375 327 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 GPC6Q9Y625 555 aaPredicted RBP8.73□□□□□ -1.01
YBX3-212ENST00000542002 CSMD2Q7Z408 3487 aa8.73□□□□□ -1.01
YBX3-212ENST00000542002 SPTBN1Q01082 2364 aaKnown RBP8.72□□□□□ -1.01
YBX3-212ENST00000542002 DCHS2Q6V1P9 2916 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 PHF3Q92576 2039 aaKnown RBP8.72□□□□□ -1.01
YBX3-212ENST00000542002 A0A0G2JPF8 293 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 LOC100653049A0A140TA62 436 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 A0A1W2PNV4 684 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 CDHR4A6H8M9 788 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 HNRNPCL2B2RXH8 293 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 HNRNPCL3B7ZW38 293 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 FAM47E-STBD1D6RA91 191 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 HNRNPRO43390 633 aaKnown RBP8.72□□□□□ -1.01
YBX3-212ENST00000542002 HNRNPCL1O60812 293 aaKnown RBP8.72□□□□□ -1.01
YBX3-212ENST00000542002 KRT34O76011 436 aa8.72□□□□□ -1.01
YBX3-212ENST00000542002 PGM3O95394 542 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms