RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 FOXF1Q12946 379 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 NFYCQ13952 458 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 QPRTQ15274 297 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 HSPB2Q16082 182 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 ADRM1Q16186 407 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 RPS26P11Q5JNZ5 115 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-209ENST00000532725 PRAMEF8Q5VWM4 474 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 PRAMEF7Q5VXH5 474 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 SP5Q6BEB4 398 aaPredicted RBP17.89■□□□□ 0.45
CPSF1-209ENST00000532725 POMZP3Q6PJE2 187 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 PLXDC2Q6UX71 529 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 SPATA21Q7Z572 469 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 TMCO5AQ8N6Q1 288 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 METTL25Q8N6Q8 603 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 C9orf106Q8NAJ2 232 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 OR52P1PQ8NH57 321 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 CNOT9Q92600 299 aaKnown RBP17.89■□□□□ 0.45
CPSF1-209ENST00000532725 WNT2BQ93097 391 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 MRGPRX4Q96LA9 322 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 UCK2Q9BZX2 261 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 EXOSC3Q9NQT5 275 aaKnown RBP17.89■□□□□ 0.45
CPSF1-209ENST00000532725 CLCF1Q9UBD9 225 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 STOML1Q9UBI4 398 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 CORO2BQ9UQ03 480 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 KIAA1549Q9HCM3 1950 aa17.89■□□□□ 0.45
CPSF1-209ENST00000532725 PRSS44E7EML9 344 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 ADAMDEC1O15204 470 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 SLC22A2O15244 555 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 ADAM11O75078 769 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 PGM3O95394 542 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 IL2RAP01589 272 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 OPN1LWP04000 364 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 ARAFP10398 606 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 NID1P14543 1247 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 CCR4P51679 360 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 DLX5P56178 289 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 SESN3P58005 492 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 COQ5Q5HYK3 327 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 GCNT6Q5T4J0 391 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 VRK2Q86Y07 508 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 WDR60Q8WVS4 1066 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 TRIM8Q9BZR9 551 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 TMEM38AQ9H6F2 299 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 ARMCX1Q9P291 453 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 CHST2Q9Y4C5 530 aa17.88■□□□□ 0.45
CPSF1-209ENST00000532725 SEC14L5O43304 696 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CCDC22O60826 627 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 RCBTB2O95199 551 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 TGM6O95932 706 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 PGCP20142 388 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF136P52737 540 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 GNGT1P63211 74 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CDK6Q00534 326 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 SELPLGQ14242 412 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 MAPRE2Q15555 327 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CTU2Q2VPK5 515 aaKnown RBP17.87■□□□□ 0.45
CPSF1-209ENST00000532725 MRPL2Q5T653 305 aaKnown RBP17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CHMP1BQ7LBR1 199 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 SNX32Q86XE0 403 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 LILRA2Q8N149 483 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 ST8SIA1Q92185 356 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 SMPDL3BQ92485 455 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 ADGRG7Q96K78 797 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 TM9SF2Q99805 663 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 RSPO3Q9BXY4 272 aaPredicted RBP17.87■□□□□ 0.45
CPSF1-209ENST00000532725 ACER3Q9NUN7 267 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 RLIMQ9NVW2 624 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 DNAJB12Q9NXW2 375 aaKnown RBP17.87■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF232Q9UNY5 417 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CAPN7Q9Y6W3 813 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 CACNA1CQ13936 2221 aa17.87■□□□□ 0.45
CPSF1-209ENST00000532725 A0A0J9YW62 118 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CDHR4A6H8M9 788 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 SNX3O60493 162 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 NPPAP01160 153 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 THBS1P07996 1170 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 ETS2P15036 469 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 ELK4P28324 431 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 RYKP34925 604 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 MTPNP58546 118 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 EEF1A1P68104 462 aaKnown RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CYLC2Q14093 348 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CAPRIN1Q14444 709 aaKnown RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 NANOGP8Q6NSW7 305 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 REEP3Q6NUK4 255 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF836Q6ZNA1 936 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CPLX4Q7Z7G2 160 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 MTDHQ86UE4 582 aaKnown RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CLIP4Q8N3C7 705 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 NFKBIDQ8NI38 313 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 BBS10Q8TAM1 723 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 LRRC58Q96CX6 371 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF845Q96IR2 970 aaPredicted RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 CCDC106Q9BWC9 280 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 FAM107BQ9H098 131 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 KAT8Q9H7Z6 458 aaKnown RBP17.86■□□□□ 0.45
CPSF1-209ENST00000532725 NANOGQ9H9S0 305 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 KCNJ16Q9NPI9 418 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 FAM53CQ9NYF3 392 aa17.86■□□□□ 0.45
CPSF1-209ENST00000532725 ZNF629Q9UEG4 869 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms