RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MAPK13O15264 365 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 EFNA2O43921 213 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 MMP23AO75900 390 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 BBOX1O75936 387 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 F10P00742 488 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 NR2C1P13056 603 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 FUT3P21217 361 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 HOXD10P28358 340 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 HPDP32754 393 aaPredicted RBP2.32□□□□□ -2.04
VPS50-219ENST00000495039 RBMXP38159 391 aaKnown RBP2.32□□□□□ -2.04
VPS50-219ENST00000495039 BTDP43251 543 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 TIMM10P62072 90 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 GNB2P62879 340 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 HERPUD1Q15011 391 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 ZNF658BQ4V348 819 aaPredicted RBP2.32□□□□□ -2.04
VPS50-219ENST00000495039 TMEM41BQ5BJD5 291 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 ATF7IP2Q5U623 682 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 LIPNQ5VXI9 398 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 ZSCAN30Q86W11 494 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 C15orf54Q8N8G6 183 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 OR2AP1Q8NGE2 309 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 SLC5A11Q8WWX8 675 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 CELF6Q96J87 481 aaKnown RBP2.32□□□□□ -2.04
VPS50-219ENST00000495039 ZNF416Q9BWM5 594 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 SRXN1Q9BYN0 137 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 CHIAQ9BZP6 476 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 AIPL1Q9NZN9 384 aa2.32□□□□□ -2.04
VPS50-219ENST00000495039 UBQLN1Q9UMX0 589 aaKnown RBP2.32□□□□□ -2.04
VPS50-219ENST00000495039 PP2D1A8MPX8 630 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ZNF705EA8MWA4 302 aaPredicted RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 CTAGE5O15320 804 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ZNF264O43296 627 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 UGT2B17O75795 530 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 MFN2O95140 757 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 TIMP1P01033 207 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 NCF1P14598 390 aaPredicted RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 NMT1P30419 496 aaKnown RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 MDH1P40925 334 aaKnown RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 CD86P42081 329 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 EGFEM1PQ0D2K5 195 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 RAB40BQ12829 278 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 IL17AQ16552 155 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 CCDC57Q2TAC2 916 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 TIGITQ495A1 244 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 CCDC14Q49A88 953 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 BLOC1S2Q6QNY1 142 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 WDR74Q6RFH5 385 aaPredicted RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 C16orf62Q7Z3J2 963 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ZNF573Q86YE8 665 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 SKA3Q8IX90 412 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 NRMQ8IXM6 262 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 RNF175Q8N4F7 328 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 TMEM252Q8N6L7 170 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 PNPT1Q8TCS8 783 aaKnown RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 TAF4BQ92750 862 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ELSPBP1Q96BH3 223 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 TXN2Q99757 166 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 SLC6A7Q99884 636 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 THUMPD2Q9BTF0 503 aaKnown RBP2.31□□□□□ -2.04
VPS50-219ENST00000495039 GLIPR2Q9H4G4 154 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 COQ10BQ9H8M1 238 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 CALHM2Q9HA72 323 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 DCDC2Q9UHG0 476 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 KLK12Q9UKR0 248 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ANGPTL2Q9UKU9 493 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 SCML2Q9UQR0 700 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 GSTK1Q9Y2Q3 226 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 IFT52Q9Y366 437 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 ATP10DQ9P241 1426 aa2.31□□□□□ -2.04
VPS50-219ENST00000495039 A0A1B0GWB2 263 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 PANO1I0J062 215 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 K7N7A8 449 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 ABCD4O14678 606 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 OR1F1O43749 312 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 HCN1O60741 890 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 ECI2O75521 394 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 LALBAP00709 142 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 IFNB1P01574 187 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 IGHV3-48P01763 117 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 HPNP05981 417 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 RNH1P13489 461 aaKnown RBP2.3□□□□□ -2.04
VPS50-219ENST00000495039 PGCP20142 388 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 AQP1P29972 269 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 UGT1A5P35504 534 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 PLK1P53350 603 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 PLA2G16P53816 162 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 EWSR1Q01844 656 aaKnown RBP eCLIP2.3□□□□□ -2.04
VPS50-219ENST00000495039 TLE4Q04727 773 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 CSTF1Q05048 431 aaKnown RBP2.3□□□□□ -2.04
VPS50-219ENST00000495039 PSG7Q13046 419 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 SLC5A12Q1EHB4 618 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 ATL3Q6DD88 541 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 FAM199XQ6PEV8 388 aaPredicted RBP2.3□□□□□ -2.04
VPS50-219ENST00000495039 ARCQ7LC44 396 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 GPATCH11Q8N954 259 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 FADS6Q8N9I5 356 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 DENND6BQ8NEG7 585 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 OR10T2Q8NGX3 314 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 C4orf36Q96KX1 117 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 C16orf45Q96MC5 204 aaPredicted RBP2.3□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms