RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 SLC6A15Q9H2J7 730 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 MMADHCQ9H3L0 296 aaPredicted RBP13.21□□□□□ -0.29
BRCA1-223ENST00000494123 ACTR3BQ9P1U1 418 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 SAMD4AQ9UPU9 718 aaKnown RBP13.21□□□□□ -0.29
BRCA1-223ENST00000494123 SLC9A8Q9Y2E8 581 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 SH3GLB1Q9Y371 365 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 LIPGQ9Y5X9 500 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 CHD6Q8TD26 2715 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 HEATR5AQ86XA9 2040 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 PCNX3Q9H6A9 2034 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 FREM3P0C091 2139 aa13.21□□□□□ -0.29
BRCA1-223ENST00000494123 BSNQ9UPA5 3926 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 M0R3H8 397 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 AP3D1O14617 1153 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 HCN1O60741 890 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 EPPINO95925 133 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 IDH2P48735 452 aaKnown RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 TOMM34Q15785 309 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 PLPPR5Q32ZL2 321 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 GLYR1Q49A26 553 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 CYP2R1Q6VVX0 501 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 FKBP9P1Q75LS8 142 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 CBLL1Q75N03 491 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 TRILQ7L0X0 811 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 COMTD1Q86VU5 262 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 RANBP3LQ86VV4 465 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 EID3Q8N140 333 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 GHDCQ8N2G8 530 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 CADM2Q8N3J6 435 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 OR10Q1Q8NGQ4 319 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 VANGL1Q8TAA9 524 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 ST8SIA1Q92185 356 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 LRGUKQ96M69 825 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 BARD1Q99728 777 aaKnown RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 SLX1AQ9BQ83 275 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 KLHDC3Q9BQ90 382 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 PIGQQ9BRB3 760 aa13.21□□□□□ -0.3
BRCA1-223ENST00000494123 RSPO3Q9BXY4 272 aaPredicted RBP13.21□□□□□ -0.3
BRCA1-223ENST00000494123 KALRNO60229 2985 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 ZIC3O60481 467 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 IGHG3P01860 377 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 GP1BBP13224 206 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 PRG2P13727 222 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 EDN3P14138 238 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 PRKCAP17252 672 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 EIF1P41567 113 aaKnown RBP13.2□□□□□ -0.3
BRCA1-223ENST00000494123 TDGF1P3P51864 188 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 HOXC5Q00444 222 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 NRF1Q16656 503 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 ARHGAP11AQ6P4F7 1023 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 PGM2L1Q6PCE3 622 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 AAGABQ6PD74 315 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 GFRALQ6UXV0 394 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 YTHDF3Q7Z739 585 aaKnown RBP13.2□□□□□ -0.3
BRCA1-223ENST00000494123 SPPL2CQ8IUH8 684 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 OR5M1Q8NGP8 315 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 NEIL3Q8TAT5 605 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 HSH2DQ96JZ2 352 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 ARHGDIGQ99819 225 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 TRIM15Q9C019 465 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 DCAF13Q9NV06 445 aaKnown RBP13.2□□□□□ -0.3
BRCA1-223ENST00000494123 RPS6KB2Q9UBS0 482 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 TESQ9UGI8 421 aaKnown RBP13.2□□□□□ -0.3
BRCA1-223ENST00000494123 SLC6A5Q9Y345 797 aa13.2□□□□□ -0.3
BRCA1-223ENST00000494123 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 OR2M5A3KFT3 312 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 SHISA8B8ZZ34 492 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 FAAHO00519 579 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 SUSD5O60279 629 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ADAM11O75078 769 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 C1QL1O75973 258 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF17P17021 662 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ACAA2P42765 397 aaKnown RBP13.19□□□□□ -0.3
BRCA1-223ENST00000494123 SESN3P58005 492 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 HSF1Q00613 529 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 TLE1Q04724 770 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 TRAP1Q12931 704 aaKnown RBP13.19□□□□□ -0.3
BRCA1-223ENST00000494123 FOXF1Q12946 379 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ZSCAN26Q16670 478 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 IFI44LQ53G44 452 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 MTX3Q5HYI7 312 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ASRGL1Q7L266 308 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 VTCN1Q7Z7D3 282 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 CARM1Q86X55 608 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 GTPBP8Q8N3Z3 284 aaPredicted RBP13.19□□□□□ -0.3
BRCA1-223ENST00000494123 OR52E4Q8NGH9 312 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 MRGPRX4Q96LA9 322 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF559Q9BR84 538 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 V9GYQ6 96 aa13.19□□□□□ -0.3
BRCA1-223ENST00000494123 A0A1B0GTH9 108 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 C7orf72A4D263 438 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 WISP2O76076 250 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 TNFRSF1BP20333 461 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 ATP6V1B2P21281 511 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 HTR3AP46098 478 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 OR1E2P47887 323 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 ZNF136P52737 540 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 FOXK1P85037 733 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 MS4A2Q01362 244 aa13.18□□□□□ -0.3
BRCA1-223ENST00000494123 MERTKQ12866 999 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms