RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RSL1D1O76021 490 aaKnown RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ATP5F1P24539 256 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 NTF4P34130 210 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF83P51522 516 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 P2RX1P51575 399 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 EFNA4P52798 201 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 FOXG1P55316 489 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 SUMO3P55854 103 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 RASGEF1BQ0VAM2 473 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 SELENBP1Q13228 472 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 PDE7AQ13946 482 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 KLHL26Q53HC5 615 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ARL13AQ5H913 290 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ABLIM2Q6H8Q1 611 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 ATP6V1C2Q8NEY4 427 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 OR52N5Q8NH56 324 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 CEP70Q8NHQ1 597 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 PHOSPHO1Q8TCT1 267 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 MUCL1Q96DR8 90 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 C1orf159Q96HA4 380 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 FCRL1Q96LA6 429 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 SOX7Q9BT81 388 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 MID1IP1Q9NPA3 183 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 SIRT3Q9NTG7 399 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 CARD8Q9Y2G2 431 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 STK38LQ9Y2H1 464 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 PTGDR2Q9Y5Y4 395 aa13.49□□□□□ -0.25
MCF2L-228ENST00000487354 GPC6Q9Y625 555 aaPredicted RBP13.49□□□□□ -0.25
MCF2L-228ENST00000487354 IGHV4-61A0A0C4DH41 118 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 POC1B-GALNT4F8VUJ3 575 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 NPIPB9F8W1W9 429 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 TBX19O60806 448 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 CSF3P09919 207 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 DHRS4L1P0CG22 281 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 TAC1P20366 129 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 PRPH2P23942 346 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 GPC1P35052 558 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 GZMKP49863 264 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 FABP6P51161 128 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 SLC25A3Q00325 362 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 MST1LQ2TV78 715 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 FAM166AQ6J272 317 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF544Q6NX49 715 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 SLC22A25Q6T423 547 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 TMEM108Q6UXF1 575 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 SSX8Q7RTT4 187 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 MTERF4Q7Z6M4 381 aaKnown RBP13.48□□□□□ -0.25
MCF2L-228ENST00000487354 LSRQ86X29 649 aaPredicted RBP13.48□□□□□ -0.25
MCF2L-228ENST00000487354 FBXL14Q8N1E6 418 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 COX18Q8N8Q8 333 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 CDS1Q92903 461 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 MRGPRX4Q96LA9 322 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 BTBD2Q9BX70 525 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 GIN1Q9NXP7 522 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 KCNS2Q9ULS6 477 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 MGAT4BQ9UQ53 548 aa13.48□□□□□ -0.25
MCF2L-228ENST00000487354 IGKV3D-15A0A087WSY6 115 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 ZNF716A6NP11 495 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 IGHV3-9P01782 118 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 PGRP06401 933 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 ALOX5P09917 674 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 PYGBP11216 843 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 HPGDP15428 266 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 EFNA1P20827 205 aaPredicted RBP13.47□□□□□ -0.25
MCF2L-228ENST00000487354 PTAFRP25105 342 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 ECHS1P30084 290 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 SERPINB4P48594 390 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 POU6F2P78424 691 aaPredicted RBP13.47□□□□□ -0.25
MCF2L-228ENST00000487354 RUNX1T1Q06455 604 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 ZCCHC12Q6PEW1 402 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 TIFABQ6ZNK6 161 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 SZRD1Q7Z422 152 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 FAM120BQ96EK7 910 aaKnown RBP13.47□□□□□ -0.25
MCF2L-228ENST00000487354 INPP5KQ9BT40 448 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 EMCNQ9ULC0 261 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 KCNE3Q9Y6H6 103 aa13.47□□□□□ -0.25
MCF2L-228ENST00000487354 LOC100289279A0A1B0GTE1 492 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 CCDC151A5D8V7 595 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 PDLIM1O00151 329 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 DNAJA2O60884 412 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 HMGN2P05204 90 aaKnown RBP13.46□□□□□ -0.25
MCF2L-228ENST00000487354 ITGA5P08648 1049 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 SNRPAP09012 282 aaKnown RBP13.46□□□□□ -0.25
MCF2L-228ENST00000487354 SDC1P18827 310 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 NR4A2P43354 598 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 GGTLC2Q14390 218 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 GABRA6Q16445 453 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 IMPG1Q17R60 797 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 SWI5Q1ZZU3 235 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 FBXW9Q5XUX1 488 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 GALNT5Q7Z7M9 940 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 MEX3DQ86XN8 651 aaKnown RBP13.46□□□□□ -0.25
MCF2L-228ENST00000487354 SLC22A9Q8IVM8 553 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 WDR31Q8NA23 367 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 OR2T11Q8NH01 316 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 SORCS2Q96PQ0 1159 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 STACQ99469 402 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 PLA2G12AQ9BZM1 189 aa13.46□□□□□ -0.25
MCF2L-228ENST00000487354 QRSL1Q9H0R6 528 aaKnown RBP13.46□□□□□ -0.25
MCF2L-228ENST00000487354 REEP4Q9H6H4 257 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms