RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 APC2O95996 2303 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 IGHV1-45A0A0A0MS14 117 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 KLF4O43474 513 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 TSPAN2O60636 221 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ABCB7O75027 752 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ADAM11O75078 769 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 SOX14O95416 240 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 NTN1O95631 604 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 CSTAP01040 98 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ADRB1P08588 477 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 HTR1AP08908 422 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 FPR3P25089 353 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 FMO3P31513 532 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 IDH2P48735 452 aaKnown RBP13.02□□□□□ -0.33
CUX1-209ENST00000487284 SLC26A5P58743 744 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 CDC42P60953 191 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 CLN3Q13286 438 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 BROXQ5VW32 411 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 C12orf73Q69YU5 71 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 RRM2BQ7LG56 351 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 PRICKLE2Q7Z3G6 844 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ZNF440Q8IYI8 595 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 LSMEM1Q8N8F7 131 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ZNF527Q8NB42 609 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 POGLUT1Q8NBL1 392 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 APCDD1LQ8NCL9 501 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 BPIFB6Q8NFQ5 453 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 TMEM255BQ8WV15 326 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ZNF700Q9H0M5 742 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 DUSP21Q9H596 190 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 TMEM27Q9HBJ8 222 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 RASSF1Q9NS23 344 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 PAK1IP1Q9NWT1 392 aaPredicted RBP13.02□□□□□ -0.33
CUX1-209ENST00000487284 ZNF226Q9NYT6 803 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 FLRT3Q9NZU0 649 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 AASSQ9UDR5 926 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 ZNF223Q9UK11 482 aaPredicted RBP13.02□□□□□ -0.33
CUX1-209ENST00000487284 TPRKBQ9Y3C4 175 aa13.02□□□□□ -0.33
CUX1-209ENST00000487284 A0A0B4J2E0 115 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 A0A1B0GX12 115 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 A0A1W2PQ72 361 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 CHP2O43745 196 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 XPNPEP2O43895 674 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 UTS2O95399 124 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 TBXA2RP21731 343 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 EEF1B2P24534 225 aaKnown RBP13.01□□□□□ -0.33
CUX1-209ENST00000487284 HOXD11P31277 338 aaPredicted RBP13.01□□□□□ -0.33
CUX1-209ENST00000487284 KRT20P35900 424 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 NR0B1P51843 470 aaKnown RBP13.01□□□□□ -0.33
CUX1-209ENST00000487284 CSNK2BP67870 215 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 SLC35A2P78381 396 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 TMEM236Q5W0B7 351 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 WDR88Q6ZMY6 472 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 MRGPREQ86SM8 312 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 NRMQ8IXM6 262 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 RNF113BQ8IZP6 322 aaKnown RBP13.01□□□□□ -0.33
CUX1-209ENST00000487284 SLC34A3Q8N130 599 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 ADAMTS17Q8TE56 1095 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 TP53INP1Q96A56 240 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 FAM46AQ96IP4 442 aaKnown RBP13.01□□□□□ -0.33
CUX1-209ENST00000487284 PLCXD1Q9NUJ7 323 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 IMPAD1Q9NX62 359 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 CPAMD8Q8IZJ3 1885 aa13.01□□□□□ -0.33
CUX1-209ENST00000487284 PCNX3Q9H6A9 2034 aa13□□□□□ -0.33
CUX1-209ENST00000487284 A0A1B0GWA3 101 aa13□□□□□ -0.33
CUX1-209ENST00000487284 H3BN98 237 aa13□□□□□ -0.33
CUX1-209ENST00000487284 MASP2O00187 686 aa13□□□□□ -0.33
CUX1-209ENST00000487284 TLX3O43711 291 aaPredicted RBP13□□□□□ -0.33
CUX1-209ENST00000487284 PIP5K1CO60331 668 aa13□□□□□ -0.33
CUX1-209ENST00000487284 MPZL2O60487 215 aa13□□□□□ -0.33
CUX1-209ENST00000487284 NGFRP08138 427 aa13□□□□□ -0.33
CUX1-209ENST00000487284 IGFBP1P08833 259 aaPredicted RBP13□□□□□ -0.33
CUX1-209ENST00000487284 POU1F1P28069 291 aa13□□□□□ -0.33
CUX1-209ENST00000487284 RNF4P78317 190 aa13□□□□□ -0.33
CUX1-209ENST00000487284 SMN1Q16637 294 aaKnown RBP13□□□□□ -0.33
CUX1-209ENST00000487284 BORAQ6PGQ7 559 aa13□□□□□ -0.33
CUX1-209ENST00000487284 RASSF6Q6ZTQ3 369 aa13□□□□□ -0.33
CUX1-209ENST00000487284 KIF18BQ86Y91 864 aa13□□□□□ -0.33
CUX1-209ENST00000487284 RAB43Q86YS6 212 aa13□□□□□ -0.33
CUX1-209ENST00000487284 CCDC103Q8IW40 242 aa13□□□□□ -0.33
CUX1-209ENST00000487284 PRR22Q8IZ63 422 aa13□□□□□ -0.33
CUX1-209ENST00000487284 SGCDQ92629 289 aa13□□□□□ -0.33
CUX1-209ENST00000487284 FGF11Q92914 225 aa13□□□□□ -0.33
CUX1-209ENST00000487284 NACC2Q96BF6 587 aa13□□□□□ -0.33
CUX1-209ENST00000487284 VMP1Q96GC9 406 aa13□□□□□ -0.33
CUX1-209ENST00000487284 IMMP1LQ96LU5 166 aa13□□□□□ -0.33
CUX1-209ENST00000487284 ZNF426Q9BUY5 554 aa13□□□□□ -0.33
CUX1-209ENST00000487284 RBM38Q9H0Z9 239 aaKnown RBP13□□□□□ -0.33
CUX1-209ENST00000487284 SLC25A19Q9HC21 320 aa13□□□□□ -0.33
CUX1-209ENST00000487284 KRCC1Q9NPI7 259 aaPredicted RBP13□□□□□ -0.33
CUX1-209ENST00000487284 EXOSC3Q9NQT5 275 aaKnown RBP13□□□□□ -0.33
CUX1-209ENST00000487284 P4HTMQ9NXG6 502 aa13□□□□□ -0.33
CUX1-209ENST00000487284 SCN3BQ9NY72 215 aa13□□□□□ -0.33
CUX1-209ENST00000487284 CNIH4Q9P003 139 aa13□□□□□ -0.33
CUX1-209ENST00000487284 ACACAQ13085 2346 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 NSG1A0A0A6YYJ2 146 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 CDC14CA4D256 554 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 SCDO00767 359 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 FAM20BO75063 409 aa12.99□□□□□ -0.33
CUX1-209ENST00000487284 ICOSLGO75144 302 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms