RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 CYSRT1A8MQ03 144 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 C19orf84I3L1E1 186 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 FXYD1O00168 92 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 AP3D1O14617 1153 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 SNX3O60493 162 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 NTN1O95631 604 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 TGM6O95932 706 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 ARAFP10398 606 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 PEPDP12955 493 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 IL7RP16871 459 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF17P17021 662 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 RYKP34925 604 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 PTGER4P35408 488 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 GCKP35557 465 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 GZMMP51124 257 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 AGFG1P52594 562 aaKnown RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 SMSP52788 366 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 SUMO3P55854 103 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CBFBQ13951 182 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 QPRTQ15274 297 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 BCL2A1Q16548 175 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CTU2Q2VPK5 515 aaKnown RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 POMZP3Q6PJE2 187 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 XKRXQ6PP77 449 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 MAMDC2Q7Z304 686 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 MTDHQ86UE4 582 aaKnown RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 COMTD1Q86VU5 262 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 PTOV1Q86YD1 416 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 EID3Q8N140 333 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CLIP4Q8N3C7 705 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 TOR1AIP2Q8NFQ8 470 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 OR52P1PQ8NH57 321 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 WDR60Q8WVS4 1066 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 FIG4Q92562 907 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 ZBTB8AQ96BR9 441 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 DTNBP1Q96EV8 351 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 MYLK2Q9H1R3 596 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 RAD21L1Q9H4I0 556 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 BCL2L10Q9HD36 194 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CLCF1Q9UBD9 225 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF443Q9Y2A4 671 aaPredicted RBP8.73□□□□□ -1.01
HDAC3-208ENST00000476739 SLC35A3Q9Y2D2 325 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CAPN7Q9Y6W3 813 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 CACNA1CQ13936 2221 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 PTPN13Q12923 2485 aa8.73□□□□□ -1.01
HDAC3-208ENST00000476739 USP9YO00507 2555 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MED12LQ86YW9 2145 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 SPTAN1Q13813 2472 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 A0A0G2JPF8 293 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 A0A0J9YW62 118 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MBD3L4A6NDZ8 208 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MBD3L3A6NE82 208 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MBD3L5A6NJ08 208 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 FAM90A27PA6NNH2 459 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 EVPLLA8MZ36 301 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 HNRNPCL2B2RXH8 293 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 HNRNPCL3B7ZW38 293 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 FAM47E-STBD1D6RA91 191 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PRSS44E7EML9 344 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 LINC01387J3KSC0 135 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 ETV2O00321 342 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 EIF1AYO14602 144 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MRASO14807 208 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 HNRNPCL1O60812 293 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 GCM2O75603 506 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PGM3O95394 542 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 CLDN14O95500 239 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 DBIP07108 87 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 HOXD4P09016 255 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PABPC4LP0CB38 370 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 GKN3PP0CG01 181 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 HNRNPCL4P0DMR1 293 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 NID1P14543 1247 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 AGAP20933 346 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PPIBP23284 216 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 AQP1P29972 269 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 ADSLP30566 484 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 CEACAM8P31997 349 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 TIMP3P35625 211 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 ZNF136P52737 540 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 SESN3P58005 492 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 RAC1P63000 192 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 EEF1A1P68104 462 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 CDK6Q00534 326 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 FOXF2Q12947 444 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 CYLC2Q14093 348 aaPredicted RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 SCARB2Q14108 478 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 TRMT5Q32P41 509 aaKnown RBP8.72□□□□□ -1.01
HDAC3-208ENST00000476739 MMEL1Q495T6 779 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 SLC25A53Q5H9E4 307 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 RABL3Q5HYI8 236 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 RIPPLY2Q5TAB7 128 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 NANOGP8Q6NSW7 305 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PIGWQ7Z7B1 504 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 CPLX4Q7Z7G2 160 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 LACC1Q8IV20 430 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 PEX5LQ8IYB4 626 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 ZZZ3Q8IYH5 903 aa8.72□□□□□ -1.01
HDAC3-208ENST00000476739 LILRA2Q8N149 483 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms