RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 IGKV3D-15A0A087WSY6 115 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 IGHV1-18A0A0C4DH31 117 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 A0A1W2PS29 197 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 AGAP5A6NIR3 686 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 PGRMC2O15173 223 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 HOXA3O43365 443 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 SH3BGRLO75368 114 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 MRPL33O75394 65 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 OPN1LWP04000 364 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ITGA5P08648 1049 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 LTA4HP09960 611 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 PPIAL4GP0DN37 164 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZNF37AP17032 561 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 CDH2P19022 906 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 CDKN2DP55273 166 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 GPX6P59796 221 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 KRTAP10-3P60369 221 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 TIAL1Q01085 375 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP54-211ENST00000474929 NAAAQ02083 359 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 MGAT2Q10469 447 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZNF155Q12901 538 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 DDX39BQ13838 428 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 OASLQ15646 514 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 TRMT12Q53H54 448 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 CASC10Q5T4H9 136 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 NPSR1Q6W5P4 371 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZNF620Q6ZNG0 422 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 Q6ZTK2 550 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 LRRC70Q7Z2Q7 622 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 MARCH3Q86UD3 253 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 UBL4BQ8N7F7 174 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 FAM169BQ8N8A8 192 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 NOA1Q8NC60 698 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 GLB1L3Q8NCI6 653 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 C2CD4AQ8NCU7 369 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 LINC01006Q8NI28 216 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 WDR20Q8TBZ3 569 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 KLHL29Q96CT2 875 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZHX1-C8orf76Q96EF9 292 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZNF300Q96RE9 604 aaPredicted RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 SHCBP1LQ9BZQ2 653 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 TRIM5Q9C035 493 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 CENPHQ9H3R5 247 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 COQ10BQ9H8M1 238 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ANKZF1Q9H8Y5 726 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 SENP1Q9P0U3 644 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 UPB1Q9UBR1 384 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 CTNNAL1Q9UBT7 734 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 REV1Q9UBZ9 1251 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 PURGQ9UJV8 347 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 ADAM29Q9UKF5 820 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZNF346Q9UL40 294 aaKnown RBP6.89□□□□□ -1.31
USP54-211ENST00000474929 CMAHPQ9Y471 501 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 U3KQK5 164 aa6.89□□□□□ -1.31
USP54-211ENST00000474929 ZCWPW2A0A1B0GU75 182 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 SH3PXD2BA1X283 911 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 NPEPPSL1A6NEC2 478 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 SDR42E2A6NKP2 422 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 TTC36A6NLP5 189 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 WASHC1A8K0Z3 465 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 ALG1L2C9J202 215 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 CLDN25C9JDP6 229 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 KLF11O14901 512 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 WNT9BO14905 357 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 ERAL1O75616 437 aaKnown RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 RP2O75695 350 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 GPANK1O95872 356 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 NGFRP08138 427 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 TPM1P09493 284 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 PCSK2P16519 638 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 BSGP35613 385 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 RAD52P43351 418 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 MAGEA8P43361 318 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 BPIFB3P59826 476 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 UBE2NP61088 152 aaKnown RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 RPS23P62266 143 aaKnown RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 CSNK2A1P68400 391 aaPredicted RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 SLC25A3Q00325 362 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 RELBQ01201 579 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 TGFBIQ15582 683 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 ABLIM2Q6H8Q1 611 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 SULT1C3Q6IMI6 304 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 GRHL2Q6ISB3 625 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 C3orf33Q6P1S2 294 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 MEPCEQ7L2J0 689 aaKnown RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 GAS2L3Q86XJ1 694 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 VSTM4Q8IW00 320 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 CDK20Q8IZL9 346 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 ZCCHC24Q8N2G6 241 aaKnown RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 PARP8Q8N3A8 854 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 DEFB108BQ8NET1 73 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 HUS1BQ8NHY5 278 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 MUC7Q8TAX7 377 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 SLC9A6Q92581 669 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 TAF15Q92804 592 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP54-211ENST00000474929 RAB1CQ92928 201 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 RAB8BQ92930 207 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 RNF166Q96A37 237 aaPredicted RBP6.88□□□□□ -1.31
USP54-211ENST00000474929 CHP1Q99653 195 aa6.88□□□□□ -1.31
USP54-211ENST00000474929 RBBP8Q99708 897 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms