RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	NPIPA7	E9PJI5	369 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643		H0YC42	278 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643		H3BNH8	94 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	TNFRSF21	O75509	655 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	STX11	O75558	287 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	NUDT14	O95848	222 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	NPIPA8	P0DM63	369 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	TBXA2R	P21731	343 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	TPD52	P55327	224 aa	Predicted RBP	13.61	□□□□□ -0.23
VARS-223	ENST00000474643	CLDN15	P56746	228 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	CLDN20	P56880	219 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	GPR68	Q15743	365 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	EXOC3L2	Q2M3D2	409 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	DEFB113	Q30KQ7	82 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	GLYR1	Q49A26	553 aa	Predicted RBP	13.61	□□□□□ -0.23
VARS-223	ENST00000474643	GPAT3	Q53EU6	434 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	EXOSC6	Q5RKV6	272 aa	Known RBP	13.61	□□□□□ -0.23
VARS-223	ENST00000474643	VWA1	Q6PCB0	445 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	MISP	Q8IVT2	679 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	FNDC9	Q8TBE3	224 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	TSPEAR	Q8WU66	669 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	FIG4	Q92562	907 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	SPDL1	Q96EA4	605 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	SDF2	Q99470	211 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	OPN3	Q9H1Y3	402 aa	Predicted RBP	13.61	□□□□□ -0.23
VARS-223	ENST00000474643	SERHL2	Q9H4I8	314 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	KLHL28	Q9NXS3	571 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	MCTS1	Q9ULC4	181 aa	Known RBP	13.61	□□□□□ -0.23
VARS-223	ENST00000474643	ARL2BP	Q9Y2Y0	163 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	MED13L	Q71F56	2210 aa		13.61	□□□□□ -0.23
VARS-223	ENST00000474643	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	SHISA8	B8ZZ34	492 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ALG1L2	C9J202	215 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	GTPBP1	O00178	669 aa	Known RBP	13.6	□□□□□ -0.23
VARS-223	ENST00000474643	TNFSF13	O75888	250 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	NGFR	P08138	427 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	CD79B	P40259	229 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	RNF144A	P50876	292 aa	Predicted RBP	13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ATP12A	P54707	1039 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	AKAP6	Q13023	2319 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ARHGAP11B	Q3KRB8	267 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	PDSS1	Q5T2R2	415 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	SLC2A7	Q6PXP3	512 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	APOOL	Q6UXV4	268 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	PHOSPHO1	Q8TCT1	267 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	MIPOL1	Q8TD10	442 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	STARD4	Q96DR4	205 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ZC3HAV1L	Q96H79	300 aa	Known RBP	13.6	□□□□□ -0.23
VARS-223	ENST00000474643	REXO5	Q96IC2	774 aa	Known RBP	13.6	□□□□□ -0.23
VARS-223	ENST00000474643	RTN4R	Q9BZR6	473 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	KLHL4	Q9C0H6	718 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	CXXC4	Q9H2H0	198 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF385D	Q9H6B1	395 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	PAQR5	Q9NXK6	330 aa	Predicted RBP	13.6	□□□□□ -0.23
VARS-223	ENST00000474643	ITPR3	Q14573	2671 aa		13.6	□□□□□ -0.23
VARS-223	ENST00000474643	TMEM247	A6NEH6	219 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	HRG	P04196	525 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	ZNF17	P17021	662 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	CRAT	P43155	626 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	SUCLG1	P53597	346 aa	Known RBP	13.59	□□□□□ -0.23
VARS-223	ENST00000474643	TXNL4A	P83876	142 aa	Known RBP	13.59	□□□□□ -0.23
VARS-223	ENST00000474643	FAM27E3	Q08E93	113 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	BLOC1S3	Q6QNY0	202 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	BTLA	Q7Z6A9	289 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	STK32C	Q86UX6	486 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	TMCO5A	Q8N6Q1	288 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	ZBTB8A	Q96BR9	441 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	ROPN1L	Q96C74	230 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	MBD6	Q96DN6	1003 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	PIK3IP1	Q96FE7	263 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	FAM107B	Q9H098	131 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	TMEM185B	Q9H7F4	350 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	RNF122	Q9H9V4	155 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	ELOVL5	Q9NYP7	299 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	C6orf203	Q9P0P8	240 aa	Predicted RBP	13.59	□□□□□ -0.23
VARS-223	ENST00000474643	MKLN1	Q9UL63	735 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	WDR45	Q9Y484	360 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	TESMIN	Q9Y4I5	508 aa		13.59	□□□□□ -0.23
VARS-223	ENST00000474643	MAP1A	P78559	2803 aa	Predicted RBP	13.59	□□□□□ -0.23
VARS-223	ENST00000474643	ZFHX3	Q15911	3703 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643		A0A1W2PQD3	144 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643		B4DXG7	233 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	C16orf97	H3BN30	126 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	NDUFAB1	O14561	156 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	CYP7B1	O75881	506 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	DCTN3	O75935	186 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	ATE1	O95260	518 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	ZCCHC18	P0CG32	403 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	NR2F1	P10589	423 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	FOXD4	Q12950	439 aa	Predicted RBP	13.58	□□□□□ -0.24
VARS-223	ENST00000474643	GTDC1	Q4AE62	458 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	PDZK1	Q5T2W1	519 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	FAM91A1	Q658Y4	838 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	FAM214B	Q7L5A3	538 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	P3H2	Q8IVL5	708 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	FUNDC1	Q8IVP5	155 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	METTL25	Q8N6Q8	603 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	CCDC197	Q8NCU1	140 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	B4GALNT2	Q8NHY0	566 aa		13.58	□□□□□ -0.24
VARS-223	ENST00000474643	BCAS4	Q8TDM0	211 aa		13.58	□□□□□ -0.24

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