RNA–Protein interactions for RNA: ENST00000473036.2

TPM3-216, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 746 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-216ENST00000473036 REP15Q6BDI9 236 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 COMTD1Q86VU5 262 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 VRK2Q86Y07 508 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 PTOV1Q86YD1 416 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 CNOT9Q92600 299 aaKnown RBP11.84□□□□□ -0.51
TPM3-216ENST00000473036 ANKRD27Q96NW4 1050 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 CGREF1Q99674 301 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 TREX2Q9BQ50 279 aaPredicted RBP11.84□□□□□ -0.51
TPM3-216ENST00000473036 TP63Q9H3D4 680 aaPredicted RBP11.84□□□□□ -0.51
TPM3-216ENST00000473036 MMADHCQ9H3L0 296 aaPredicted RBP11.84□□□□□ -0.51
TPM3-216ENST00000473036 A4GALTQ9NPC4 353 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 POLE3Q9NRF9 147 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 ARL8BQ9NVJ2 186 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 ALKBH4Q9NXW9 302 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 LIPT1Q9Y234 373 aa11.84□□□□□ -0.51
TPM3-216ENST00000473036 B2RBV5 119 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 GYG2O15488 501 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ZNF264O43296 627 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 GCM2O75603 506 aaPredicted RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 NTN1O95631 604 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ACTL6AO96019 429 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ARAFP10398 606 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 UBL4AP11441 157 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 COX6B1P14854 86 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 CPN1P15169 458 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 HPGDP15428 266 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ZNF708P17019 499 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 CHMP24386 653 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 MSX1P28360 303 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 SHC1P29353 583 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 NUDT2P50583 147 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 P2RX1P51575 399 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 CLDN20P56880 219 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 PMPCAQ10713 525 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 FADDQ13158 208 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 GANABQ14697 944 aaKnown RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 ZNF630Q2M218 657 aaPredicted RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 ACSF3Q4G176 576 aaPredicted RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 C1orf185Q5T7R7 199 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 WLSQ5T9L3 541 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 RAET1LQ5VY80 246 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 SPNS3Q6ZMD2 512 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ADGRE4PQ86SQ3 457 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 GGNQ86UU5 652 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 MISPQ8IVT2 679 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 ZNF527Q8NB42 609 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 NAXEQ8NCW5 288 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 OR8J3Q8NGG0 315 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 PHF10Q8WUB8 498 aaKnown RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 LRRC58Q96CX6 371 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 RCN3Q96D15 328 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 SFXN2Q96NB2 322 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 TUBA1CQ9BQE3 449 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 TTYH2Q9BSA4 534 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 LAT2Q9GZY6 243 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 MTHFD2LQ9H903 347 aaPredicted RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 RLIMQ9NVW2 624 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 GMPR2Q9P2T1 348 aaKnown RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 P2RX2Q9UBL9 471 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.83□□□□□ -0.52
TPM3-216ENST00000473036 USP22Q9UPT9 525 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 CAMK2AQ9UQM7 478 aa11.83□□□□□ -0.52
TPM3-216ENST00000473036 VPS13CQ709C8 3753 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 A0A0G2JNJ9 132 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 ETV2O00321 342 aaPredicted RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 AP3D1O14617 1153 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 EIF4E2O60573 245 aaKnown RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 EPPINO95925 133 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 CSTAP01040 98 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 OPN1LWP04000 364 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 UBTFL6P0CB48 400 aaPredicted RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 SSTR2P30874 369 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 EEF1A1P68104 462 aaKnown RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 KCNJ10P78508 379 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 SRYQ05066 204 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 FOXF1Q12946 379 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 GLYR1Q49A26 553 aaPredicted RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 NANOGP8Q6NSW7 305 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 POMZP3Q6PJE2 187 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 XKRXQ6PP77 449 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 ZNF836Q6ZNA1 936 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 MRGPRGQ86SM5 289 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 CCDC71Q8IV32 467 aaPredicted RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 LIX1LQ8IVB5 337 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 CLIP4Q8N3C7 705 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 GTPBP8Q8N3Z3 284 aaPredicted RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 TNIP2Q8NFZ5 429 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 NFKBIDQ8NI38 313 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 RNF145Q96MT1 663 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 BTBD10Q9BSF8 475 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 THUMPD3Q9BV44 507 aaKnown RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 SPATA9Q9BWV2 254 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 KAT8Q9H7Z6 458 aaKnown RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 PTGES2Q9H7Z7 377 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 NANOGQ9H9S0 305 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 BCL2L10Q9HD36 194 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 SPAG4Q9NPE6 437 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 DNAJB12Q9NXW2 375 aaKnown RBP11.82□□□□□ -0.52
TPM3-216ENST00000473036 Q9UFV3 132 aa11.82□□□□□ -0.52
TPM3-216ENST00000473036 A0A087WZY1 265 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms