RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 RBBP4Q09028 425 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 QPRTQ15274 297 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 TOMM34Q15785 309 aaPredicted RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 ADRM1Q16186 407 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 RPS26P11Q5JNZ5 115 aaPredicted RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 NANOGP8Q6NSW7 305 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 SEM1Q6ZVN7 128 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 CHMP1BQ7LBR1 199 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 MAMDC2Q7Z304 686 aaPredicted RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 PIGWQ7Z7B1 504 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 HMGN2P46Q86SG4 172 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 ZNF440Q8IYI8 595 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 OR8J3Q8NGG0 315 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 OR10Q1Q8NGQ4 319 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 FBXO27Q8NI29 283 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 TMEM234Q8WY98 164 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 ST8SIA1Q92185 356 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 CNOT9Q92600 299 aaKnown RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 SDCCAG3Q96C92 435 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 TRIB1Q96RU8 372 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 MYLK2Q9H1R3 596 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 ARMC7Q9H6L4 198 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 KAT8Q9H7Z6 458 aaKnown RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 NANOGQ9H9S0 305 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 RNF6Q9Y252 685 aa13.79□□□□□ -0.2
SDC3-203ENST00000471567 SPTBN1Q01082 2364 aaKnown RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 SPTAN1Q13813 2472 aaKnown RBP13.79□□□□□ -0.2
SDC3-203ENST00000471567 CDHR4A6H8M9 788 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 MBD3L4A6NDZ8 208 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 MBD3L3A6NE82 208 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 MBD3L5A6NJ08 208 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 CLDN24A6NM45 220 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 CLCA1A8K7I4 914 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 HSPB2A8KAH6 182 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 FXYD1O00168 92 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 FAAHO00519 579 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 BCAS1O75363 584 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 CLDN14O95500 239 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 COX4I1P13073 169 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 ME2P23368 584 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 CEACAM8P31997 349 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 CLDN15P56746 228 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 MTPNP58546 118 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 RPS3AP61247 264 aaKnown RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 PLAURQ03405 335 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 FOXF1Q12946 379 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 SCARB2Q14108 478 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 SELPLGQ14242 412 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 CAPRIN1Q14444 709 aaKnown RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 HSPB2Q16082 182 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 MRPL2Q5T653 305 aaKnown RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 RNF220Q5VTB9 566 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 NET1Q7Z628 596 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 SERPINA11Q86U17 422 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 VRK2Q86Y07 508 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 KRT73Q86Y46 540 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 GRAMD2AQ8IUY3 354 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 UBQLNLQ8IYU4 475 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 C11orf65Q8NCR3 313 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 HIPK4Q8NE63 616 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 MBD3L2Q8NHZ7 208 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 NFKBIDQ8NI38 313 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 WNT2BQ93097 391 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 NPAS1Q99742 590 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 SPATA5L1Q9BVQ7 753 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 SPATA9Q9BWV2 254 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 ACER3Q9NUN7 267 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 DNAJB12Q9NXW2 375 aaKnown RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 ZNF443Q9Y2A4 671 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 KLF2Q9Y5W3 355 aaPredicted RBP13.78□□□□□ -0.2
SDC3-203ENST00000471567 PTPN13Q12923 2485 aa13.78□□□□□ -0.2
SDC3-203ENST00000471567 A0A0G2JNJ9 132 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 GJE1A6NN92 205 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 TOXO94900 526 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 CLDN1O95832 211 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 IL2RAP01589 272 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 PABPC4LP0CB38 370 aaKnown RBP13.77□□□□□ -0.21
SDC3-203ENST00000471567 UQCRBP14927 111 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 SUCLG1P53597 346 aaKnown RBP13.77□□□□□ -0.21
SDC3-203ENST00000471567 CLDN20P56880 219 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 SESN3P58005 492 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 EEF1A1P68104 462 aaKnown RBP13.77□□□□□ -0.21
SDC3-203ENST00000471567 CYP51A1Q16850 503 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZNF311Q5JNZ3 666 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZNF836Q6ZNA1 936 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ESPNLQ6ZVH7 1005 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 GGNQ86UU5 652 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 HEATR5AQ86XA9 2040 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 PTOV1Q86YD1 416 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 SLC30A8Q8IWU4 369 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 LILRB4Q8NHJ6 448 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZNF563Q8TA94 476 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 CA5BP1Q8WTZ4 195 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 SMPDL3BQ92485 455 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 SLC35B4Q969S0 331 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZNF524Q96C55 264 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 CMTM5Q96DZ9 223 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZFP3Q96NJ6 502 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 ZNF607Q96SK3 696 aa13.77□□□□□ -0.21
SDC3-203ENST00000471567 TM9SF2Q99805 663 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms