RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 TRDV1A0A1B0GX56 115 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 A0A1W2PPK0 400 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 PPP1R3DO95685 299 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 S1PR1P21453 382 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 DRD1P21728 446 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 FGF9P31371 208 aaPredicted RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 MAP3K8P41279 467 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 CTBP2P56545 445 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 SFSWAPQ12872 951 aaKnown RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 CRMP1Q14194 572 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 UBQLNLQ8IYU4 475 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 SLC44A3Q8N4M1 653 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 C7orf57Q8NEG2 295 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 TMCO6Q96DC7 493 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 LMF1Q96S06 567 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 TEAD3Q99594 435 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 ATF6BQ99941 703 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 TEX12Q9BXU0 123 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 HOXD1Q9GZZ0 328 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 RNF32Q9H0A6 362 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 B3GAT2Q9NPZ5 323 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 POLR1CO15160 346 aaPredicted RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 AKAP8O43823 692 aaKnown RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 CTSEP14091 401 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 PPM1FP49593 454 aaPredicted RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 EIPR1Q53HC9 387 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 RNF44Q7L0R7 432 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 MEPCEQ7L2J0 689 aaKnown RBP17.64■□□□□ 0.41
VIM-203ENST00000469543 ACBD7Q8N6N7 88 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 C17orf47Q8NEP4 570 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 NR4A3Q92570 626 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 GRIP1Q9Y3R0 1128 aa17.64■□□□□ 0.41
VIM-203ENST00000469543 CACNA1CQ13936 2221 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 A0A1B0GWA3 101 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 HMGN1P05114 100 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 CHRNB1P11230 501 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 MAOAP21397 527 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 PGDP52209 483 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 EXOSC6Q5RKV6 272 aaKnown RBP17.63■□□□□ 0.41
VIM-203ENST00000469543 ARL9Q6T311 187 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 ZNF517Q6ZMY9 492 aaPredicted RBP17.63■□□□□ 0.41
VIM-203ENST00000469543 SSX6Q7RTT6 188 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 SYT9Q86SS6 491 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 OR52L1Q8NGH7 329 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 FBRSQ9HAH7 460 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 SPACA6W5XKT8 324 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 CABIN1Q9Y6J0 2220 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 ABCA7Q8IZY2 2146 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 SPTY2D1-AS1A0A0U1RR47 76 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 MAOBP27338 520 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 SHC1P29353 583 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 ACVR1BP36896 505 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 OR12D2P58182 307 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 YPEL5P62699 121 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 RCBTB1Q8NDN9 531 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 OR13C5Q8NGS8 318 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 OR6F1Q8NGZ6 308 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 BRIX1Q8TDN6 353 aaKnown RBP17.63■□□□□ 0.41
VIM-203ENST00000469543 CAPSLQ8WWF8 208 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 FAM210AQ96ND0 272 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 TPSD1Q9BZJ3 242 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 POT1Q9NUX5 634 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 MED31Q9Y3C7 131 aa17.63■□□□□ 0.41
VIM-203ENST00000469543 A0A087WV62 115 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 DAPL1A0PJW8 107 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 OR5K3A6NET4 321 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 HLA-DPB1P04440 258 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 BMP8BP34820 402 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 OR10A3P58181 314 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 MRPS21P82921 87 aaKnown RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 SCN1BQ07699 218 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 SLC3A1Q07837 685 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 CCINQ13939 588 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 BMP8AQ7Z5Y6 402 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 OAFQ86UD1 273 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 LNX2Q8N448 690 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 OR4C3Q8NH37 302 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 DNAJA4Q8WW22 397 aaPredicted RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 LRIT1Q9P2V4 623 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 BOLA1Q9Y3E2 137 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 PCDHGB2Q9Y5G2 931 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 MN1Q10571 1320 aaPredicted RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 A0A0B4J293 547 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 IRGMA1A4Y4 181 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 MEIOCA2RUB1 952 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 C2CD4DB7Z1M9 353 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 ACAA2P42765 397 aaKnown RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 KIR2DL3P43628 341 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 CRYZQ08257 329 aaKnown RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 FHL1Q13642 323 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 IL18Q14116 193 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 ZNF267Q14586 743 aaPredicted RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 AMZ1Q400G9 498 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 XKRXQ6PP77 449 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 RIT1Q92963 219 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 CLIP3Q96DZ5 547 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 RBM18Q96H35 190 aaKnown RBP17.62■□□□□ 0.41
VIM-203ENST00000469543 MAP3K3Q99759 626 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 FN3KQ9H479 309 aa17.62■□□□□ 0.41
VIM-203ENST00000469543 MED17Q9NVC6 651 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms