RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 MED17Q9NVC6 651 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 LUZP4Q9P127 313 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 DKKL1Q9UK85 242 aa13.79□□□□□ -0.2
NPHP4-205ENST00000466897 SPENQ96T58 3664 aaKnown RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 TCRBV5S2A0A599 114 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 FAM166BA8MTA8 275 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 LINC01387J3KSC0 135 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SUSD5O60279 629 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 ZIC3O60481 467 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 HCN1O60741 890 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 CYP7B1O75881 506 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 NTN1O95631 604 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 ZNF682O95780 498 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 CCR4P51679 360 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 NFATC3Q12968 1075 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 FLOT2Q14254 428 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SLC10A1Q14973 349 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 QPRTQ15274 297 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 IFI44LQ53G44 452 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 KRTCAP3Q53RY4 240 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 CMPK2Q5EBM0 449 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 NHSL2Q5HYW2 709 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 RANBP3LQ86VV4 465 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SPPL2CQ8IUH8 684 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 GTPBP8Q8N3Z3 284 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 FAM83FQ8NEG4 500 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 OR6T1Q8NGN1 323 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SNRNP40Q96DI7 357 aaKnown RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 PYURFQ96I23 114 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 TPD52L3Q96J77 140 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 HSH2DQ96JZ2 352 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 MRGPRX4Q96LA9 322 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 LRGUKQ96M69 825 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 BBC3Q96PG8 261 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 RAB3IPQ96QF0 476 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SLX1AQ9BQ83 275 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 ACER3Q9NUN7 267 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 TAS2R10Q9NYW0 307 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 NTNG1Q9Y2I2 539 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SH3GLB1Q9Y371 365 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 SHANK1Q9Y566 2161 aa13.78□□□□□ -0.2
NPHP4-205ENST00000466897 A0A1B0GVC2 190 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 M0R3H8 397 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 AP3D1O14617 1153 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 DNAJC13O75165 2243 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 PRKD3O94806 890 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 NUDT14O95848 222 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 SEMG1P04279 462 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 GKN3PP0CG01 181 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 PRKCAP17252 672 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 HK1P19367 917 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 ELK4P28324 431 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 WBP2NLQ6ICG8 309 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 ARSKQ6UWY0 536 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 CYP2R1Q6VVX0 501 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 VTCN1Q7Z7D3 282 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 CARM1Q86X55 608 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 CISD2Q8N5K1 135 aaKnown RBP13.77□□□□□ -0.21
NPHP4-205ENST00000466897 PHF10Q8WUB8 498 aaKnown RBP13.77□□□□□ -0.21
NPHP4-205ENST00000466897 GPR137Q96N19 417 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 KLHDC3Q9BQ90 382 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF559Q9BR84 538 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 PIGQQ9BRB3 760 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 TRIM2Q9C040 744 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF407Q9C0G0 2248 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 MAGIXQ9H6Y5 334 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 C12orf10Q9HB07 376 aa13.77□□□□□ -0.21
NPHP4-205ENST00000466897 TTLL8A6PVC2 850 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 FRS3O43559 492 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 CDC40O60508 579 aaKnown RBP eCLIP13.76□□□□□ -0.21
NPHP4-205ENST00000466897 CIB2O75838 187 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 TRAPPC6AO75865 159 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 IFNW1P05000 195 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 UMPSP11172 480 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 PRG2P13727 222 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 CHMP24386 653 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 PSMA4P25789 261 aaKnown RBP13.76□□□□□ -0.21
NPHP4-205ENST00000466897 MST1P26927 711 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 RYKP34925 604 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 SLC1A3P43003 542 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 HTR3AP46098 478 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 IDH2P48735 452 aaKnown RBP13.76□□□□□ -0.21
NPHP4-205ENST00000466897 TDGF1P3P51864 188 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 MAP2K6P52564 334 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 GFRA1P56159 465 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 SESN3P58005 492 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 B3GALT5-AS1P59052 145 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 COPZ1P61923 177 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 TOMM34Q15785 309 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-205ENST00000466897 NPTX1Q15818 432 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 SWT1Q5T5J6 900 aaKnown RBP13.76□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF613Q6PF04 617 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 FKBP9P1Q75LS8 142 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 TRILQ7L0X0 811 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 GRINAQ7Z429 371 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 LACC1Q8IV20 430 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 OR4D11Q8NGI4 311 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 OR14L1PQ8NHC6 308 aa13.76□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF563Q8TA94 476 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms