RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 PSMA4P25789 261 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ADH6P28332 368 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 SLC6A8P48029 635 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 NUP107P57740 925 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 PLAURQ03405 335 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 RBBP4Q09028 425 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 FOXF1Q12946 379 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 QPRTQ15274 297 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ZSWIM7Q19AV6 140 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ACSF3Q4G176 576 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 MRPL2Q5T653 305 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 NET1Q7Z628 596 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 MRGPRGQ86SM5 289 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 SERPINA11Q86U17 422 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 KRT73Q86Y46 540 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 PTOV1Q86YD1 416 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 UBQLNLQ8IYU4 475 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 MEIOBQ8N635 442 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 C11orf65Q8NCR3 313 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 HIPK4Q8NE63 616 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 FBXO27Q8NI29 283 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ITLN2Q8WWU7 325 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 RND1Q92730 232 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF524Q96C55 264 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ECSITQ9BQ95 431 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ARMC7Q9H6L4 198 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 CALHM2Q9HA72 323 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 RLIMQ9NVW2 624 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 DNAJB12Q9NXW2 375 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF443Q9Y2A4 671 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 UTP20O75691 2785 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 DOPEY2Q9Y3R5 2298 aa13.1□□□□□ -0.31
SQSTM1-205ENST00000464493 NCOA6Q14686 2063 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ARHGAP21Q5T5U3 1957 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 USP9YO00507 2555 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 CDHR4A6H8M9 788 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 DCTN3O75935 186 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 PABPC4LP0CB38 370 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 AGAP20933 346 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 PRDX6P30041 224 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 RYKP34925 604 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 GZMMP51124 257 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SUCLG1P53597 346 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 CLDN20P56880 219 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 EEFSECP57772 596 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 RAC1P63000 192 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 EEF1A1P68104 462 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ART3Q13508 389 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SLC25A53Q5H9E4 307 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 RABL3Q5HYI8 236 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF311Q5JNZ3 666 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 GKAP1Q5VSY0 366 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 RNF220Q5VTB9 566 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 NSUN5P2Q63ZY6 315 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 XKRXQ6PP77 449 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF836Q6ZNA1 936 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 CHMP1BQ7LBR1 199 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 LACC1Q8IV20 430 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 CLIP4Q8N3C7 705 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF808Q8N4W9 903 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ANKS4BQ8N8V4 417 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 OR10Q1Q8NGQ4 319 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF563Q8TA94 476 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 TMEM234Q8WY98 164 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ST8SIA1Q92185 356 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SMPDL3BQ92485 455 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 MRGPRX4Q96LA9 322 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 LRRC37BQ96QE4 947 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 TRIB1Q96RU8 372 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ZNF607Q96SK3 696 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 TUBA1CQ9BQE3 449 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SPATA5L1Q9BVQ7 753 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SPATA9Q9BWV2 254 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 COQ3Q9NZJ6 369 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 ANGPT4Q9Y264 503 aa13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 SPTBN1Q01082 2364 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-205ENST00000464493 CD8B2A6NJW9 211 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 CLCA1A8K7I4 914 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 KDM4EB2RXH2 506 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 H0YC42 278 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ETV2O00321 342 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SEC14L5O43304 696 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ADAM11O75078 769 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SERPINB7O75635 380 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 NTN1O95631 604 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 OPN1LWP04000 364 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ME2P23368 584 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ELK4P28324 431 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 AQP1P29972 269 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 TPD52P55327 224 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 CLDN15P56746 228 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SESN3P58005 492 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SEM1Q6ZVN7 128 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 GGNQ86UU5 652 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 GRAMD2AQ8IUY3 354 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 SLC30A8Q8IWU4 369 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ZZZ3Q8IYH5 903 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 ZNF440Q8IYI8 595 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 LILRA2Q8N149 483 aa13.08□□□□□ -0.32
SQSTM1-205ENST00000464493 PSMG3-AS1Q96PY0 264 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms