RNA–Protein interactions for RNA: ENST00000448971.5

USP39-206, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-206ENST00000448971 OIT3Q8WWZ8 545 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 KLHDC3Q9BQ90 382 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 CXXC4Q9H2H0 198 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 ZNF385DQ9H6B1 395 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 TMEM185BQ9H7F4 350 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 THUMPD1Q9NXG2 353 aaKnown RBP13.13□□□□□ -0.31
USP39-206ENST00000448971 CALML5Q9NZT1 146 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.13□□□□□ -0.31
USP39-206ENST00000448971 KCNN3Q9UGI6 736 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 LEF1Q9UJU2 399 aaPredicted RBP13.13□□□□□ -0.31
USP39-206ENST00000448971 ICAM5Q9UMF0 924 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 SLC35A3Q9Y2D2 325 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 AP4B1Q9Y6B7 739 aa13.13□□□□□ -0.31
USP39-206ENST00000448971 FLNAP21333 2647 aaKnown RBP13.13□□□□□ -0.31
USP39-206ENST00000448971 VPS13CQ709C8 3753 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 A0A1W2PP18 115 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 C7orf72A4D263 438 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 CLIC1O00299 241 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 EIF1AYO14602 144 aaKnown RBP13.12□□□□□ -0.31
USP39-206ENST00000448971 DVL2O14641 736 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 EIF4E2O60573 245 aaKnown RBP13.12□□□□□ -0.31
USP39-206ENST00000448971 GUSBP08236 651 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 BMP5P22003 454 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 ELK4P28324 431 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 TIMP3P35625 211 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 EIF1P41567 113 aaKnown RBP13.12□□□□□ -0.31
USP39-206ENST00000448971 MVDP53602 400 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 CLDN20P56880 219 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 FADDQ13158 208 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 GNA13Q14344 377 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 MAPK14Q16539 360 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 BCL2A1Q16548 175 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 PAGE3Q5JUK9 113 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 LRIF1Q5T3J3 769 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 METTL21CQ5VZV1 264 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 PLXDC2Q6UX71 529 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 DHDDSQ86SQ9 333 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 C9orf106Q8NAJ2 232 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 OR5W2Q8NH69 310 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 WDR60Q8WVS4 1066 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 NPAS1Q99742 590 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 TM9SF2Q99805 663 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 ZNF559Q9BR84 538 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 PINK1Q9BXM7 581 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 SAP130Q9H0E3 1048 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 SLC38A1Q9H2H9 487 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 CALHM2Q9HA72 323 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.12□□□□□ -0.31
USP39-206ENST00000448971 CLCF1Q9UBD9 225 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 NDUFAF1Q9Y375 327 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 DNHD1Q96M86 4753 aa13.12□□□□□ -0.31
USP39-206ENST00000448971 HRNRQ86YZ3 2850 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 SLC22A20A6NK97 555 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 H0YC42 278 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 LINGO3P0C6S8 592 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 TMIGD3P0DMS9 266 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 PPIBP23284 216 aaKnown RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 EIF1AXP47813 144 aaKnown RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 SUCLG1P53597 346 aaKnown RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 TPD52P55327 224 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 QPRTQ15274 297 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 RGNQ15493 299 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 SGCBQ16585 318 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 TMEM44Q2T9K0 475 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 SLC25A35Q3KQZ1 300 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 RPS26P11Q5JNZ5 115 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 PEX5LQ8IYB4 626 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 GCNT2Q8N0V5 402 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 FBXO27Q8NI29 283 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 POC1BQ8TC44 478 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 TMEM19Q96HH6 336 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 FOXC2Q99958 501 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 LAT2Q9GZY6 243 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 MRGBPQ9NV56 204 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 SLC25A37Q9NYZ2 338 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 VAPAQ9P0L0 249 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 SLAMF8Q9P0V8 285 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 KLHL14Q9P2G3 628 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 CORO2BQ9UQ03 480 aa13.11□□□□□ -0.31
USP39-206ENST00000448971 GPC6Q9Y625 555 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 NUP214P35658 2090 aaPredicted RBP13.11□□□□□ -0.31
USP39-206ENST00000448971 FREM3P0C091 2139 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 AGAP5A6NIR3 686 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 CLDN24A6NM45 220 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 EEF1E1-BLOC1S5C9J1V9 151 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 C5orf58C9J3I9 102 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 EEF1E1O43324 174 aaKnown RBP13.1□□□□□ -0.31
USP39-206ENST00000448971 OPN1LWP04000 364 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 DBIP07108 87 aaKnown RBP13.1□□□□□ -0.31
USP39-206ENST00000448971 IL7RP16871 459 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 PRKCAP17252 672 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 HOXB9P17482 250 aaPredicted RBP13.1□□□□□ -0.31
USP39-206ENST00000448971 PGCP20142 388 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 CEACAM8P31997 349 aaPredicted RBP13.1□□□□□ -0.31
USP39-206ENST00000448971 RYKP34925 604 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 SFTPDP35247 375 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 PGM1P36871 562 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 ZNF136P52737 540 aa13.1□□□□□ -0.31
USP39-206ENST00000448971 CLDN15P56746 228 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms