RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 NBPF5PQ86XG9 351 aaPredicted RBP4.64□□□□□ -1.67
USP54-206ENST00000433394 FAM133AQ8N9E0 248 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 MAPK1IP1LQ8NDC0 245 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 OR4D5Q8NGN0 318 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 ADAMTS16Q8TE57 1224 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 MS4A14Q96JA4 679 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 TMEM43Q9BTV4 400 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 SPATA16Q9BXB7 569 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 NAT10Q9H0A0 1025 aaKnown RBP4.64□□□□□ -1.67
USP54-206ENST00000433394 SMYD3Q9H7B4 428 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 PTBP2Q9UKA9 531 aaKnown RBP4.64□□□□□ -1.67
USP54-206ENST00000433394 COPS3Q9UNS2 423 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 RABL2BQ9UNT1 228 aa4.64□□□□□ -1.67
USP54-206ENST00000433394 CHD1O14646 1710 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 CEP170Q5SW79 1584 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 IGHV2-70DA0A0C4DH43 119 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 FAM240BA0A1B0GVZ2 78 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 TRIM64CA6NLI5 447 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 KRTAP16-1A8MUX0 517 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 FAM220BPB1ANY3 271 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 H0Y8G0 127 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 CABYRO75952 493 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 VENTXO95231 258 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 ALOX5P09917 674 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SLC35E2P0CK97 266 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 FOLR2P14207 255 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 GCFC2P16383 781 aaKnown RBP4.63□□□□□ -1.67
USP54-206ENST00000433394 LAP3P28838 519 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SULT1E1P49888 294 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 ATP5IP56385 69 aaPredicted RBP4.63□□□□□ -1.67
USP54-206ENST00000433394 ST3GAL3Q11203 375 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 DPYSL2Q16555 572 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 C15orf32Q32M92 178 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 MAJINQ3KP22 176 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 ZNF658Q5TYW1 1059 aaPredicted RBP4.63□□□□□ -1.67
USP54-206ENST00000433394 ZSCAN25Q6NSZ9 544 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 CCBE1Q6UXH8 406 aaPredicted RBP4.63□□□□□ -1.67
USP54-206ENST00000433394 DNM1P46Q6ZS02 220 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 RUFY3Q7L099 469 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 NANOGNBQ7Z5D8 188 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 KRTAP7-1Q8IUC3 87 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 VSTM4Q8IW00 320 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 C9orf40Q8IXQ3 194 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SLC35F2Q8IXU6 374 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 TMEM123Q8N131 208 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SLC39A11Q8N1S5 342 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 OR13C2Q8NGS9 318 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 OR1F12Q8NHA8 337 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 PSMG2Q969U7 264 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SLC41A3Q96GZ6 507 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 PSKH2Q96QS6 385 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 TCHPQ9BT92 498 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 PLLPQ9Y342 182 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 FLVCR1Q9Y5Y0 555 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 SHROOM2Q13796 1616 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 CASKIN1Q8WXD9 1431 aa4.63□□□□□ -1.67
USP54-206ENST00000433394 CCDC18Q5T9S5 1454 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 PCNX3Q9H6A9 2034 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 TRAV26-1A0A087WT03 109 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 F5H6K3 240 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 CXCL11O14625 94 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 PRRG1O14668 218 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 SURF6O75683 361 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 DUSP14O95147 198 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 SNX4O95219 450 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 CA1P00915 261 aaPredicted RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 IL1BP01584 269 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 IGHG3P01860 377 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 RPS2P15880 293 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 HOXD10P28358 340 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 ADORA2BP29275 332 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 UGT1A3P35503 534 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 RPL13AP40429 203 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 EPS15P42566 896 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 RPL29P47914 159 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 PLK1P53350 603 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 KRTAP10-9P60411 292 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 KLRC3Q07444 240 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 DDX39BQ13838 428 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 IMMTQ16891 758 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 GSG1Q2KHT4 349 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 ATL3Q6DD88 541 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 TGIF2LXQ8IUE1 241 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 NRMQ8IXM6 262 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 CCDC65Q8IXS2 484 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 ATP6V0D2Q8N8Y2 350 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 OR51G2Q8NGK0 314 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 SPATA3Q8NHX4 192 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 ANKRD49Q8WVL7 239 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 EFHD2Q96C19 240 aaPredicted RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 C1orf147Q96MC9 270 aaPredicted RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 CCT8L2Q96SF2 557 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 SECISBP2Q96T21 854 aaKnown RBP4.62□□□□□ -1.67
USP54-206ENST00000433394 NPAS2Q99743 824 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 SLC35A5Q9BS91 424 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 DPH7Q9BTV6 452 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 CAB39LQ9H9S4 337 aa4.62□□□□□ -1.67
USP54-206ENST00000433394 MIEF1Q9NQG6 463 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms