RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 IL5P05113 134 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 NRG3P56975 720 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 MAT1AQ00266 395 aaKnown RBP9.94□□□□□ -0.82
USP54-204ENST00000422491 LINC00303Q3SY05 128 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 ZNF311Q5JNZ3 666 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 PRPF38BQ5VTL8 546 aaKnown RBP9.94□□□□□ -0.82
USP54-204ENST00000422491 OLFML2AQ68BL7 652 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 MBOAT2Q6ZWT7 520 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 TRMT11Q7Z4G4 463 aaKnown RBP9.94□□□□□ -0.82
USP54-204ENST00000422491 LRRTM4Q86VH4 590 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 LSRQ86X29 649 aaPredicted RBP9.94□□□□□ -0.82
USP54-204ENST00000422491 VRK2Q86Y07 508 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 FIBINQ8TAL6 211 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 TMEM255BQ8WV15 326 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 HMGB4Q8WW32 186 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 GLYATL1Q969I3 302 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 TRMT2BQ96GJ1 504 aaKnown RBP9.94□□□□□ -0.82
USP54-204ENST00000422491 MFRPQ9BY79 579 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 KCNK7Q9Y2U2 307 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 KCNE3Q9Y6H6 103 aa9.94□□□□□ -0.82
USP54-204ENST00000422491 CASP8AP2Q9UKL3 1982 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 CHURC1-FNTBB4DL54 471 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 GABARAPH6UMI1 98 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 FLRT2O43155 660 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 STX11O75558 287 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 AQP8O94778 261 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 PCDH8O95206 1070 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ASGR1P07306 291 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 MST1P26927 711 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 OR12D2P58182 307 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 FXYD6P3P58550 94 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ZNF85Q03923 595 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 MELKQ14680 651 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 GPNMBQ14956 572 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 PRAMEF14Q5SWL7 426 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 PRAMEF13Q5VWM6 474 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ARL14EPQ8N8R7 260 aaPredicted RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 OR5J2Q8NH18 312 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 CMTM3Q96MX0 182 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 OR1F2PQ96R84 312 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 C12orf57Q99622 126 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ZCCHC2Q9C0B9 1178 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 RHBGQ9H310 441 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 MRPL17Q9NRX2 175 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 MED11Q9P086 117 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 AKAP7Q9P0M2 348 aaPredicted RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 NFKBIL1Q9UBC1 381 aaPredicted RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 KLK11Q9UBX7 282 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ST6GALNAC2Q9UJ37 374 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 CDHR4A6H8M9 788 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ANTXRLA6NF34 631 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 J3QLW9 94 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ZNF19P17023 458 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 NT5EP21589 574 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 MAT2AP31153 395 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 PTGER1P34995 402 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 PRKAG1P54619 331 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 H2BFSP57053 126 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 AP3S2P59780 193 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 POLR2LP62875 67 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 FGL1Q08830 312 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ELAVL2Q12926 359 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 LASP1Q14847 261 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 ZNF805Q5CZA5 627 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 FAM199XQ6PEV8 388 aaPredicted RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 GDF7Q7Z4P5 450 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 PM20D2Q8IYS1 436 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ZNF689Q96CS4 500 aaPredicted RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 LMLNQ96KR4 655 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 SMAD5Q99717 465 aaKnown RBP9.93□□□□□ -0.82
USP54-204ENST00000422491 SLC38A1Q9H2H9 487 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 SLC6A5Q9Y345 797 aa9.93□□□□□ -0.82
USP54-204ENST00000422491 ANKRD20A5PA0PJZ0 165 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 LINC01387J3KSC0 135 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 BHLHE40O14503 412 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 HMGN2P05204 90 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 MRPL3P09001 348 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 IL9P15248 144 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 RPL35P42766 123 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 S100A12P80511 92 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 IL10RAQ13651 578 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 KCNA10Q16322 511 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 CSRP2Q16527 193 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 PRAMEF8Q5VWM4 474 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 PRAMEF7Q5VXH5 474 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 FAAP20Q6NZ36 180 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 GDPD4Q6W3E5 623 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 CFAP206Q8IYR0 622 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 AMER3Q8N944 861 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 BRIX1Q8TDN6 353 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 GANCQ8TET4 914 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 SETD7Q8WTS6 366 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 CASD1Q96PB1 797 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 IL17FQ96PD4 163 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 DERL3Q96Q80 235 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 ENKD1Q9H0I2 346 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OR52D1Q9H346 318 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 GPN1Q9HCN4 374 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 ZNF304Q9HCX3 659 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 KLHL9Q9P2J3 617 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms