RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 ATXN3P54252 364 aaPredicted RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 MAZP56270 477 aaKnown RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 TPI1P60174 286 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 KRTAP10-9P60411 292 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 GNB1P62873 340 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 POLR2LP62875 67 aaKnown RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 HERVK_113P63132 956 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CRADDP78560 199 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF45Q02386 682 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SP4Q02446 784 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 GNA12Q03113 381 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 EMX2Q04743 252 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PRKCDQ05655 676 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CHRNB3Q05901 458 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 FADDQ13158 208 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 NME3Q13232 169 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PPIGQ13427 754 aaKnown RBP eCLIP2.36□□□□□ -2.038e-9■□□□□ 9.9
VPS41-206ENST00000418457 CAMK2DQ13557 499 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 RCAN2Q14206 197 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SMU1Q2TAY7 513 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TMEM30BQ3MIR4 351 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 UGT3A2Q3SY77 523 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TOR1AIP1Q5JTV8 583 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 KRBOX4Q5JUW0 171 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 FFAR4Q5NUL3 377 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF678Q5SXM1 525 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SYT6Q5T7P8 510 aaPredicted RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 XAF1Q6GPH4 301 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 UGT3A1Q6NUS8 523 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ADAM5Q6NVV9 412 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF544Q6NX49 715 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PMF1Q6P1K2 205 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TTC23LQ6PF05 361 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CNSTQ6PJW8 725 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 XKRXQ6PP77 449 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CES3Q6UWW8 571 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ISLR2Q6UXK2 745 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SMIM5Q71RC9 77 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 KRT77Q7Z794 578 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PIGZQ86VD9 579 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 P2RY8Q86VZ1 359 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 HORMAD1Q86X24 394 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 HIPK1Q86Z02 1210 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CLEC4FQ8N1N0 589 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CCDC185Q8N715 623 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CAMKVQ8NCB2 501 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 OR8J3Q8NGG0 315 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 OR6Q1Q8NGQ2 317 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 OR52N5Q8NH56 324 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 OR5K1Q8NHB7 308 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 LILRB4Q8NHJ6 448 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 RHOXF1Q8NHV9 184 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 RHEBL1Q8TAI7 183 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SETD6Q8TBK2 473 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TMEM190Q8WZ59 177 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 RORBQ92753 470 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 LRRC58Q96CX6 371 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 OTUB1Q96FW1 271 aaPredicted RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 ATXN7L3BQ96GX2 97 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF486Q96H40 463 aaPredicted RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 PIWIL1Q96J94 861 aaKnown RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 RADILQ96JH8 1075 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 LRR1Q96L50 414 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PPP1R36Q96LQ0 422 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 NSMCE2Q96MF7 247 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF560Q96MR9 790 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF558Q96NG5 402 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 MUS81Q96NY9 551 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 LRRC3BQ96PB8 259 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 NPY6RQ99463 290 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 LITAFQ99732 161 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SH3GL1Q99961 368 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 APOL4Q9BPW4 351 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TBL1YQ9BQ87 522 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 MLPHQ9BV36 600 aaPredicted RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 FUNDC2Q9BWH2 189 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ERVK-6Q9BXR3 956 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 PRRG4Q9BZD6 226 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 BARHL1Q9BZE3 327 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 NDEL1Q9GZM8 345 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ADNPQ9H2P0 1102 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ATP13A3Q9H7F0 1226 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SYNDIG1Q9H7V2 258 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 GORASP2Q9H8Y8 452 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ERVMER34-1Q9H9K5 563 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TRPV4Q9HBA0 871 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SYTL2Q9HCH5 934 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 TM9SF3Q9HD45 589 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SCRT2Q9NQ03 307 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CHRAC1Q9NRG0 131 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 C2orf42Q9NWW7 574 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 P4HTMQ9NXG6 502 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 SCN3BQ9NY72 215 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 HOXC10Q9NYD6 342 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 CCDC59Q9P031 241 aaKnown RBP2.36□□□□□ -2.03
VPS41-206ENST00000418457 SEPT10Q9P0V9 454 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 DNAJB9Q9UBS3 223 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 HMGXB4Q9UGU5 601 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 ZNF229Q9UJW7 825 aa2.36□□□□□ -2.03
VPS41-206ENST00000418457 EIF3LQ9Y262 564 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms