RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 EID3Q8N140 333 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 METTL25Q8N6Q8 603 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 C11orf65Q8NCR3 313 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 HIPK4Q8NE63 616 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 PHF10Q8WUB8 498 aaKnown RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 PIF1Q9H611 641 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 TMEM185BQ9H7F4 350 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 EXOSC3Q9NQT5 275 aaKnown RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 ZNF337Q9Y3M9 751 aa11.27□□□□□ -0.61
SKA1-203ENST00000417656 NCOA6Q14686 2063 aaPredicted RBP11.27□□□□□ -0.61
SKA1-203ENST00000417656 CDHR4A6H8M9 788 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 H0YC42 278 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 DNAJA2O60884 412 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 PABPC4LP0CB38 370 aaKnown RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 PEPDP12955 493 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 GABRA1P14867 456 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 CPN1P15169 458 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 IL11P20809 199 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 PSMA4P25789 261 aaKnown RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 PRDX6P30041 224 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 RYKP34925 604 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 GZMMP51124 257 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 TPD52P55327 224 aaPredicted RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 CLDN20P56880 219 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 NUP107P57740 925 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 RBBP4Q09028 425 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 LARS2Q15031 903 aaKnown RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 RNF220Q5VTB9 566 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 MTFR2Q6P444 385 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 B3GNT6Q6ZMB0 384 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 SERPINA11Q86U17 422 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 LSRQ86X29 649 aaPredicted RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 KRT73Q86Y46 540 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 FBXO27Q8NI29 283 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 KCTD12Q96CX2 325 aaKnown RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 CMTM5Q96DZ9 223 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 LRRC37BQ96QE4 947 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 TRIB1Q96RU8 372 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 SH3GL1Q99961 368 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 TUBA1CQ9BQE3 449 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 RLIMQ9NVW2 624 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 USP22Q9UPT9 525 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 CHST2Q9Y4C5 530 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 GPC6Q9Y625 555 aaPredicted RBP11.26□□□□□ -0.61
SKA1-203ENST00000417656 BAHCC1Q9P281 2608 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 MYO7BQ6PIF6 2116 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 LRRK2Q5S007 2527 aa11.26□□□□□ -0.61
SKA1-203ENST00000417656 DIDO1Q9BTC0 2240 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 CCT8L1PA6NM43 557 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 AHRRA9YTQ3 701 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 LINC01387J3KSC0 135 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 NTN1O95631 604 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 OPN1SWP03999 348 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 OPN1LWP04000 364 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 GKN3PP0CG01 181 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 GLI4P10075 376 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ETS2P15036 469 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 PGCP20142 388 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ELK4P28324 431 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 SHC1P29353 583 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 PTGER4P35408 488 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 EIF1P41567 113 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 SLC6A8P48029 635 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 SUCLG1P53597 346 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 PCBP3P57721 371 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 SESN3P58005 492 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 EPS8Q12929 822 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ZNF311Q5JNZ3 666 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 PLXDC2Q6UX71 529 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 SEM1Q6ZVN7 128 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ARPINQ7Z6K5 226 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 GGNQ86UU5 652 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 COMTD1Q86VU5 262 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 CALHM3Q86XJ0 350 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 CLIP4Q8N3C7 705 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 MEIOBQ8N635 442 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ANKS4BQ8N8V4 417 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 CCDC197Q8NCU1 140 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ZNF563Q8TA94 476 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ITLN2Q8WWU7 325 aaPredicted RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 ST8SIA1Q92185 356 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 MRGPRX4Q96LA9 322 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ECSITQ9BQ95 431 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 GPATCH1Q9BRR8 931 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 TTYH2Q9BSA4 534 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 SPATA9Q9BWV2 254 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 EFCAB1Q9HAE3 211 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 ARL8BQ9NVJ2 186 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 CMTM6Q9NX76 183 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 GMPR2Q9P2T1 348 aaKnown RBP11.25□□□□□ -0.61
SKA1-203ENST00000417656 IFT52Q9Y366 437 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 AP4B1Q9Y6B7 739 aa11.25□□□□□ -0.61
SKA1-203ENST00000417656 DOPEY1Q5JWR5 2465 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 A1L4Q6 167 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 CFAP73A6NFT4 308 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 WIPF3A6NGB9 483 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 CLCA1A8K7I4 914 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 FAM220BPB1ANY3 271 aa11.24□□□□□ -0.61
SKA1-203ENST00000417656 ETV2O00321 342 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms