RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 FAM122AQ96E09 287 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PHYHIPLQ96FC7 376 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PCED1BQ96HM7 432 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PDGFDQ9GZP0 370 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 KLHL42Q9P2K6 505 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3DA0A087WVF3 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3IA0A087WXS9 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3EA0A087X179 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3KA0A087X1G2 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3FA6NER0 549 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3LB9A6J9 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 E5RGE8 158 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PFKMP08237 780 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3HP0C7X1 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ACPPP15309 386 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 RHBDL3P58872 404 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CAMK2BQ13554 666 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 FCN2Q15485 313 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 MEP1BQ16820 701 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TOR2AQ5JU69 321 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 KIAA0319Q5VV43 1072 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3GQ6DHY5 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3CQ6IPX1 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TAC4Q86UU9 113 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 UEVLDQ8IX04 471 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 SLC38A6Q8IZM9 456 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TBC1D3Q8IZP1 549 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 POLMQ9NP87 494 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 SERTAD4Q9NUC0 356 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TCRBV7S3A2A0A539 114 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 NPIPA2E9PIF3 369 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 NPIPA3F8WFD2 350 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CDC123O75794 336 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 NSA2O95478 260 aaKnown RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PIPP12273 146 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PRDX3P30048 256 aaKnown RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 STK19P49842 368 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 EXOSC6Q5RKV6 272 aaKnown RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 FRMD1Q8N878 549 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 M1APQ8TC57 530 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 POU2F3Q9UKI9 436 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 KNG1P01042 644 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SNRPGP62308 76 aaKnown RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 OR1S2Q8NGQ3 325 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 C1QTNF2Q9BXJ5 285 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SLC39A9Q9NUM3 307 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 HHLA2Q9UM44 414 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 MAFBQ9Y5Q3 323 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 LOC102723532A0A0G2JNH3 316 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SURF4O15260 269 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ACTL6BO94805 426 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 CSTAP01040 98 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 TACR3P29371 465 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SOX18P35713 384 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ACY1Q03154 408 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ACSM1Q08AH1 577 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 MDGA2Q7Z553 956 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 PHOSPHO1Q8TCT1 267 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SMPDL3BQ92485 455 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 LAMB1P07942 1786 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SMIM28A0A1B0GU29 152 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 C9J4A7 227 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 PGCP20142 388 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 FDXRP22570 491 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 CCR9P51686 369 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 CLDN6P56747 220 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 LTBQ06643 244 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 AMZ1Q400G9 498 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 RNF113BQ8IZP6 322 aaKnown RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 FAM213BQ8TBF2 198 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ZCCHC10Q8TBK6 192 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 UBL7Q96S82 380 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 GABRPO00591 440 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 GPLD1P80108 840 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 GPR155Q7Z3F1 870 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SCLYQ96I15 445 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 HRASLS5Q96KN8 279 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SFXN2Q96NB2 322 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SUV39H2Q9H5I1 410 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ASH2LQ9UBL3 628 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 A0A0U1RQK1 487 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 HSD17B7P56937 341 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 CFAP52Q8N1V2 620 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 TFAP2BQ92481 460 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 PRDM9Q9NQV7 894 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 DNMT3AQ9Y6K1 912 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ZFP37Q9Y6Q3 630 aaPredicted RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 NALCNQ8IZF0 1738 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 TMEM235A6NFC5 223 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 POM121CA8CG34 1229 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 FOLR1P15328 257 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SGSHP51688 502 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 PPP1R8Q12972 351 aaKnown RBP12.15□□□□□ -0.46
COL6A3-206ENST00000409809 AAK1Q2M2I8 961 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF852Q6ZMS4 543 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 C6orf120Q7Z4R8 191 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 PIM3Q86V86 326 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 OR5M3Q8NGP4 307 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 SLC38A3Q99624 504 aa12.15□□□□□ -0.46
COL6A3-206ENST00000409809 ESRP2Q9H6T0 727 aaKnown RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms