RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 A0A1B0GWA3 101 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 A0A1B0GX12 115 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 IRGMA1A4Y4 181 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 MRPL3P09001 348 aaKnown RBP12.35□□□□□ -0.43
CCDC3-202ENST00000378839 SLC35E2P0CK97 266 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 GPR50Q13585 617 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 FAM131AQ6UXB0 335 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 MEPCEQ7L2J0 689 aaKnown RBP12.35□□□□□ -0.43
CCDC3-202ENST00000378839 METTL27Q8N6F8 245 aaPredicted RBP12.35□□□□□ -0.43
CCDC3-202ENST00000378839 ZNF614Q8N883 585 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 CYB561A3Q8NBI2 242 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 ZDHHC1Q8WTX9 485 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 DNAJA4Q8WW22 397 aaPredicted RBP12.35□□□□□ -0.43
CCDC3-202ENST00000378839 PEX11GQ96HA9 241 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 MMP28Q9H239 520 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 SEMA6CQ9H3T2 930 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 FOLH1BQ9HBA9 442 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 ZMIZ1Q9ULJ6 1067 aa12.35□□□□□ -0.43
CCDC3-202ENST00000378839 KIR2DS5A0A0G2JLQ3 304 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 A0A0G2JNG1 304 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 LRRN3E7EW58 273 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 KIR2DS3K7RE56 304 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 HPGDSO60760 199 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 WNT1P04628 370 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 GYPBP06028 91 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 RUNX1T1Q06455 604 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ACSM1Q08AH1 577 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 KIR2DS5Q14953 304 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 P2RY14Q15391 338 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MARCH9Q86YJ5 346 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MCATQ8IVS2 390 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 KLHL36Q8N4N3 616 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 TOR1AIP2Q8NFQ8 470 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 DIRAS2Q96HU8 199 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 TNFRSF13CQ96RJ3 184 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 LMF1Q96S06 567 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 CCDC3Q9BQI4 270 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 JAM3Q9BX67 310 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 LRRN3Q9H3W5 708 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 CCDC86Q9H6F5 360 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 C8orf33Q9H7E9 229 aaPredicted RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 COMMD3Q9UBI1 195 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 FAM221BA6H8Z2 402 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 NOTOA8MTQ0 251 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 IMPA2O14732 288 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 GNB5O14775 395 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 HMGN1P05114 100 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 SLC2A5P22732 501 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 APEX1P27695 318 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 HCCSP53701 268 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 PRTGQ2VWP7 1150 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 AMZ1Q400G9 498 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MANEAQ5SRI9 462 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 FAM27D1Q5T7N8 215 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 PRPF38BQ5VTL8 546 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ZCCHC12Q6PEW1 402 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 SSX6Q7RTT6 188 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 TDHQ8IZJ6 230 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 UBE2J2Q8N2K1 259 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 OR52N1Q8NH53 320 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 VSTM2LQ96N03 204 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 SOSTQ9BQB4 213 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ZNF426Q9BUY5 554 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 PRO3102Q9H379 93 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MCCC2Q9HCC0 563 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 B3GAT2Q9NPZ5 323 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MALT1Q9UDY8 824 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 PLA2G10O15496 165 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 IGLV3-19P01714 112 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MAOAP21397 527 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 E2F1Q01094 437 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 GAS6Q14393 721 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 KLHL12Q53G59 568 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 AKAP14Q86UN6 197 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 RNF113BQ8IZP6 322 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 LRRC17Q8N6Y2 441 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 C19orf47Q8N9M1 422 aaKnown RBP12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ZSCAN1Q8NBB4 408 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 RCBTB1Q8NDN9 531 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ZNRF4Q8WWF5 429 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 TEAD3Q99594 435 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 MAP3K3Q99759 626 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 ALG8Q9BVK2 526 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 IFT27Q9BW83 186 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 PRRG3Q9BZD7 231 aa12.34□□□□□ -0.43
CCDC3-202ENST00000378839 FABP12A6NFH5 140 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 FAM47E-STBD1D6RA91 191 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CASKO14936 926 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 POLR1CO15160 346 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 MAGEB4O15481 346 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 FMO6PO60774 539 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 PPP1R3DO95685 299 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 ATP6V1E1P36543 226 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 CTBP2P56545 445 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 RACK1P63244 317 aaKnown RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 RSBN1Q5VWQ0 802 aaPredicted RBP12.33□□□□□ -0.44
CCDC3-202ENST00000378839 RPTNQ6XPR3 784 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 OOSP2Q86WS3 158 aa12.33□□□□□ -0.44
CCDC3-202ENST00000378839 UBQLNLQ8IYU4 475 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms