RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GUSBP08236 651 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 PRR23D2P0DMB1 279 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 CD8BP10966 210 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 GLULP15104 373 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 BLKP51451 505 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 MAZP56270 477 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 BDH1Q02338 343 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 ZNHIT3Q15649 155 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 PARGQ86W56 976 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 GDPD1Q8N9F7 314 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 RBM18Q96H35 190 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 PEX11GQ96HA9 241 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 VSTM2LQ96N03 204 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 TBX5Q99593 518 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 TEAD3Q99594 435 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 ZNF426Q9BUY5 554 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 COMMD3Q9UBI1 195 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 SIRT4Q9Y6E7 314 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 C2orf92A0A1B0GVN3 265 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 SYNDIG1LA6NDD5 238 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 CCDC182A6NF36 153 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 DYRK3O43781 588 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 TMCC2O75069 709 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 REM1O75628 298 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 CSF3P09919 207 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 RNH1P13489 461 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 SCN1BQ07699 218 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 GPR50Q13585 617 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 TAB1Q15750 504 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 AGAP6Q5VW22 663 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 FCRLBQ6BAA4 426 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 AGAP4Q96P64 663 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 POLHQ9Y253 713 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 SLC35A3Q9Y2D2 325 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 DTX4Q9Y2E6 619 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 LINC00854A0A1B0GVQ3 168 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 CTNSO60931 367 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 CDC123O75794 336 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 NCR1O76036 304 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 NGFRP08138 427 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 IL9P15248 144 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 GALP22466 123 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 OR2B6P58173 313 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 STX4Q12846 297 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 ART5Q96L15 291 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 TNFRSF13CQ96RJ3 184 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 ATF6BQ99941 703 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 TRIM2Q9C040 744 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 C2orf42Q9NWW7 574 aa19.22■□□□□ 0.67
CCDC88B-203ENST00000359902 DAPL1A0PJW8 107 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 SEC14L5O43304 696 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 RNF13O43567 381 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 SRPX2O60687 465 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 NOS3P29474 1203 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 PPP3R1P63098 170 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 MAT1AQ00266 395 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 FHL1Q13642 323 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 ERV3-1Q14264 604 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 GALEQ14376 348 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 UBQLNLQ8IYU4 475 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 LSMEM1Q8N8F7 131 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 KIAA1143Q96AT1 154 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 OR51V1Q9H2C8 321 aa19.21■□□□□ 0.67
CCDC88B-203ENST00000359902 SLC22A31A6NKX4 558 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 DVL2O14641 736 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 CSTF1Q05048 431 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 ASAH1Q13510 395 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 KCNJ8Q15842 424 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 NPSR1Q6W5P4 371 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 OAFQ86UD1 273 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 GATAD2AQ86YP4 633 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 FAM160A2Q8N612 972 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 RCBTB1Q8NDN9 531 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 OR4C6Q8NH72 309 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC35B4Q969S0 331 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 SPACA7Q96KW9 195 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 MAP3K3Q99759 626 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 GDF15Q99988 308 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 SOSTQ9BQB4 213 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 GRIP1Q9Y3R0 1128 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 CLDN16Q9Y5I7 305 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 OR2W5A6NFC9 320 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 RIIAD1A6NNX1 92 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 GTPBP1O00178 669 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 HRO43593 1189 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 PPP1R3DO95685 299 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 CLUP10909 449 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 SLC2A5P22732 501 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 RBM34P42696 430 aaKnown RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 BTG2P78543 158 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 IGLV3-21P80748 117 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 PYDC2Q56P42 97 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 ALG10BQ5I7T1 473 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 LINC00114Q6XXX2 140 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 RTL4Q6ZR62 310 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 OR10H4Q8NGA5 316 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 RLN3Q8WXF3 142 aa19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.2■□□□□ 0.66
CCDC88B-203ENST00000359902 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms