RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 VNN3Q9NY84 501 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 SCOCQ9UIL1 159 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 ZMIZ1Q9ULJ6 1067 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 SLC7A7Q9UM01 511 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 OAZ3Q9UMX2 235 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 OR6C76A6NM76 312 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 OR10H3O60404 316 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 TSPAN2O60636 221 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 SEMA7AO75326 666 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 SLITRK5O94991 958 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 SOX14O95416 240 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 LYNP07948 512 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 FASP25445 335 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 KCNJ5P48544 419 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 CLK3P49761 638 aaKnown RBP8.41□□□□□ -1.06
USP4-202ENST00000351842 DCAF7P61962 342 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 TUBA3CQ13748 450 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 OGFRL1Q5TC84 451 aaPredicted RBP8.41□□□□□ -1.06
USP4-202ENST00000351842 ZCCHC12Q6PEW1 402 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 TUBA3EQ6PEY2 450 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 OR14L1PQ8NHC6 308 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 MAGEE2Q8TD90 523 aaPredicted RBP8.41□□□□□ -1.06
USP4-202ENST00000351842 SMURF2Q9HAU4 748 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 THUMPD1Q9NXG2 353 aaKnown RBP8.41□□□□□ -1.06
USP4-202ENST00000351842 NDUFAF4Q9P032 175 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 NTMQ9P121 344 aa8.41□□□□□ -1.06
USP4-202ENST00000351842 TCRBV5S2A0A599 114 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 CDHR4A6H8M9 788 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 PCDH17O14917 1159 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 ACOX3O15254 700 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 LDLRP01130 860 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 ITGB2P05107 769 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 BMP2P12643 396 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 HSF1Q00613 529 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 LIN52Q52LA3 116 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 NKAIN4Q8IVV8 208 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 ATG16L2Q8NAA4 619 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 GEMIN6Q8WXD5 167 aaKnown RBP8.4□□□□□ -1.06
USP4-202ENST00000351842 OTULINQ96BN8 352 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 C5orf34Q96MH7 638 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 CNTNAP3BQ96NU0 1288 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 CNTNAP3Q9BZ76 1288 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 GORASP2Q9H8Y8 452 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 ENAMQ9NRM1 1142 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 SELENONQ9NZV5 590 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 CNIH4Q9P003 139 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 KIF17Q9P2E2 1029 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 DKKL1Q9UK85 242 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 SLC6A5Q9Y345 797 aa8.4□□□□□ -1.06
USP4-202ENST00000351842 TRBV4-1A0A0J9YWV2 114 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 OR6C70A6NIJ9 312 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 B4DXG7 233 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 MKRN2OSH3BPM6 223 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 RAP2AP10114 183 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 ETS2P15036 469 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 IL11P20809 199 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 GPR4P46093 362 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 PLAURQ03405 335 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 TRAP1Q12931 704 aaKnown RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 ELOAQ14241 798 aaKnown RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 ALG10BQ5I7T1 473 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 WIPI1Q5MNZ9 446 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 BORAQ6PGQ7 559 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 KDM8Q8N371 416 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 ZNF441Q8N8Z8 693 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 TMEM255BQ8WV15 326 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 UBL7Q96S82 380 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 REEP1Q9H902 201 aa8.4□□□□□ -1.07
USP4-202ENST00000351842 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 PDP1Q9P0J1 537 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 CHCHD2Q9Y6H1 151 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 MAP1AP78559 2803 aaPredicted RBP8.4□□□□□ -1.07
USP4-202ENST00000351842 TMEM229AB2RXF0 380 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 DENRO43583 198 aaKnown RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 PIP5K1CO60331 668 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NEURL1O76050 574 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 GADD45GO95257 159 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 HTR2AP28223 471 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 GALNSP34059 522 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 MAP3K8P41279 467 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 PNLIPRP2P54317 469 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TMPRSS3P57727 454 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NADK2Q4G0N4 442 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 CRB2Q5IJ48 1285 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 C1QL3Q5VWW1 255 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 KLHL17Q6TDP4 642 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ZNF730Q6ZMV8 503 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 TMEM179BQ7Z7N9 219 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 SULF2Q8IWU5 870 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 OR1J4Q8NGS1 313 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 GPR119Q8TDV5 335 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 IP6K3Q96PC2 410 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 VCX3BQ9H321 246 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 ARMC7Q9H6L4 198 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 LDAHQ9H6V9 325 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 NMNAT1Q9HAN9 279 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 DNAJB12Q9NXW2 375 aaKnown RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 TUBA8Q9NY65 449 aaPredicted RBP8.39□□□□□ -1.07
USP4-202ENST00000351842 AP3M1Q9Y2T2 418 aa8.39□□□□□ -1.07
USP4-202ENST00000351842 A0A1W2PNR3 127 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms