RNA–Protein interactions for RNA: ENST00000336180.6

LIMK1-201, Transcript of LIM domain kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMK1, Length 3,219 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-201ENST00000336180 KIRREL2Q6UWL6 708 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 LYPD4Q6UWN0 246 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 MBOAT2Q6ZWT7 520 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 TM9SF4Q92544 642 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 DEPDC7Q96QD5 511 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 CTRCQ99895 268 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 RTN4RQ9BZR6 473 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 UBQLN3Q9H347 655 aa11.61□□□□□ -0.55
LIMK1-201ENST00000336180 URB1O60287 2271 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TRAPPC13A5PLN9 417 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TLCD2A6NGC4 264 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 K7ESF4 209 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TSPAN9O75954 239 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 AZGP1P25311 298 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 GABRA4P48169 554 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 COX10Q12887 443 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 CD226Q15762 336 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 NDUFA9Q16795 377 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ALG10BQ5I7T1 473 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 C22orf42Q6IC83 251 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 GUSBP11Q6P575 273 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ZNF620Q6ZNG0 422 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 SPEM1Q8N4L4 309 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 C10orf53Q8N6V4 93 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 PMEPA1Q969W9 287 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 NXF5Q9H1B4 397 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 C12orf4Q9NQ89 552 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 DUSP22Q9NRW4 184 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 SIDT1Q9NXL6 827 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ADAM18Q9Y3Q7 739 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 RPL36Q9Y3U8 105 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ARRDC5A6NEK1 342 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 H3BSH0 61 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ZNF749O43361 778 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 CTNSO60931 367 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 EIF2B2P49770 351 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 AFF3P51826 1226 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 RPS25P62851 125 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 IRF3Q14653 427 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ZNF829Q3KNS6 432 aaPredicted RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 APOOLQ6UXV4 268 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 BCORP1Q8N888 145 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 FAM83FQ8NEG4 500 aaPredicted RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 CCDC74AQ96AQ1 378 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 BPIFA2Q96DR5 249 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 VSTM2LQ96N03 204 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TMED9Q9BVK6 235 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 MKL2Q9ULH7 1088 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 BDP1A6H8Y1 2624 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TRIM64BA6NI03 449 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 FAM25EA8MYX2 175 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 PSMD9O00233 223 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TIAF1O95411 115 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 CSTAP01040 98 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 POU3F3P20264 500 aaPredicted RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 GRPRP30550 384 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 SLC15A1P46059 708 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 MTNR1AP48039 350 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 STARD6P59095 220 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 MED25Q71SY5 747 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 SIRT6Q8N6T7 355 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 TMEM163Q8TC26 289 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 FNDC8Q8TC99 324 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 PHOSPHO1Q8TCT1 267 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 BORCS5Q969J3 196 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 C1GALT1C1Q96EU7 318 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ISG20L2Q9H9L3 353 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 ENOPH1Q9UHY7 261 aa11.6□□□□□ -0.55
LIMK1-201ENST00000336180 MRPS33Q9Y291 106 aaKnown RBP11.6□□□□□ -0.55
LIMK1-201ENST00000336180 UNC119BA6NIH7 251 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 TBX1O43435 398 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 NCR1O76036 304 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 CSTF2P33240 577 aaKnown RBP eCLIP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 ARFIP1P53367 373 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 SNRPGP62308 76 aaKnown RBP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 NSDHLQ15738 373 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 PGGHGQ32M88 737 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 ARHGAP40Q5TG30 622 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 POGLUT1Q8NBL1 392 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 SLC38A2Q96QD8 506 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 PSD2Q9BQI7 771 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 TAPBPLQ9BX59 468 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 HDHD5Q9BXW7 423 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 POLDIP3Q9BY77 421 aaKnown RBP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 TWSG1Q9GZX9 223 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 AKIRIN1Q9H9L7 192 aaPredicted RBP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 NTMQ9P121 344 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 SATB2Q9UPW6 733 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 ARPC4-TTLL3A0A0A6YYG9 625 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 A6NL46 340 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 CCRL2O00421 344 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 SRPX2O60687 465 aaPredicted RBP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 NKX2-2O95096 273 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 NSA2O95478 260 aaKnown RBP11.59□□□□□ -0.55
LIMK1-201ENST00000336180 GIMD1P0DJR0 217 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 PRKACAP17612 351 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 GPR3P46089 330 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 CD300CQ08708 224 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 PLEKHG7Q6ZR37 379 aa11.59□□□□□ -0.55
LIMK1-201ENST00000336180 ATCAYQ86WG3 371 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms