RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 HMBOX1Q6NT76 420 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 TCTN3Q6NUS6 607 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 MAMSTRQ6ZN01 415 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SPRED1Q7Z699 444 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ERI1Q8IV48 349 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 CHERPQ8IWX8 916 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR4D9Q8NGE8 314 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR5T3Q8NGG3 340 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR5D16Q8NGK9 328 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 TP53INP1Q96A56 240 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 SCARF2Q96GP6 870 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 C16orf58Q96GQ5 468 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 EMC3Q9P0I2 261 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ASB4Q9Y574 426 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 PLCE1Q9P212 2302 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 A0A1B0GTL3 188 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ENTPD6O75354 484 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 MT-CO3P00414 261 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DAP3P51398 398 aaKnown RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DNASE1L3Q13609 305 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 LAPTM4AQ15012 233 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 TBC1D25Q3MII6 688 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 MED25Q71SY5 747 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 WDR5BQ86VZ2 330 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 GPR137CQ8N3F9 429 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ANKRD53Q8N9V6 530 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 OR6N2Q8NGY6 317 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 DDIT4LQ96D03 193 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 RNF6Q9Y252 685 aa6.38□□□□□ -1.39
SF3B1-201ENST00000335508 GPC6Q9Y625 555 aaPredicted RBP6.38□□□□□ -1.39
SF3B1-201ENST00000335508 ETHE1O95571 254 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 IFNA6P05013 189 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PNLIPP16233 465 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PUM1Q14671 1186 aaKnown RBP eCLIP6.37□□□□□ -1.391e-9■■□□□ 13.5
SF3B1-201ENST00000335508 MAD2L1BPQ15013 274 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PGGHGQ32M88 737 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 NADK2Q4G0N4 442 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 WDR74Q6RFH5 385 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 QSOX2Q6ZRP7 698 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 USP43Q70EL4 1123 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RNF175Q8N4F7 328 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CIDECQ96AQ7 238 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CARD8Q9Y2G2 431 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CADP27708 2225 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 OR6C76A6NM76 312 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 B4E171 279 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RRP8O43159 456 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 S100GP29377 79 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TSPAN7P41732 249 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ZXDAP98168 799 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 DUSP8Q13202 625 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 C6orf15Q6UXA7 325 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF704Q6ZNC4 412 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TMPPEQ6ZT21 453 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CPEB2Q7Z5Q1 589 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 UEVLDQ8IX04 471 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 D2HGDHQ8N465 521 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 OR5M3Q8NGP4 307 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 C1orf216Q8TAB5 229 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 NXF5Q9H1B4 397 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 LAMP5Q9UJQ1 280 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 KLF13Q9Y2Y9 288 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF337Q9Y3M9 751 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 LOXL2Q9Y4K0 774 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CIB4A0PJX0 185 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 EPOPA6NHQ4 379 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 FRS3O43559 492 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 KDM4BO94953 1096 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 LGI1O95970 557 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 AVPR2P30518 371 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 SLC1A3P43003 542 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 DUSP5Q16690 384 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MAJINQ3KP22 176 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TRMT12Q53H54 448 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CCNJQ5T5M9 372 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 SAXO2Q658L1 398 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 GLT8D1Q68CQ7 371 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MRM1Q6IN84 353 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 GPAT4Q86UL3 456 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 DND1Q8IYX4 353 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CNN2Q99439 309 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CHST8Q9H2A9 424 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 NDUFAF4Q9P032 175 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MOKQ9UQ07 419 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 DPPA5A6NC42 116 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 LOC110117498-PIK3R3F6TDL0 507 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MKRN2OSH3BPM6 223 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 UPK1AO00322 258 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ERGP11308 486 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 IDUAP35475 653 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MAGEA2P43356 314 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PPP2R2BQ00005 443 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ATP1A4Q13733 1029 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CBFBQ13951 182 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PLAG1Q6DJT9 500 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 KRT74Q7RTS7 529 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 OVCH1Q7RTY7 1134 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MARCH9Q86YJ5 346 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CLDN22Q8N7P3 220 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RHOXF1Q8NHV9 184 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms