RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SHC2P98077 582 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 MELKQ14680 651 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC27A4Q6P1M0 643 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM122BQ7Z309 247 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 GJD3Q8N144 294 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM86B1Q8N7N1 296 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 LSMEM1Q8N8F7 131 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 OR4D11Q8NGI4 311 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 OIT3Q8WWZ8 545 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 FKBP10Q96AY3 582 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 MOGAT1Q96PD6 335 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 NUDT22Q9BRQ3 303 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM39AQ9NV64 488 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 KLRF1Q9NZS2 232 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 CTSFQ9UBX1 484 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 FBXL2Q9UKC9 423 aa7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 PRPF19Q9UMS4 504 aaKnown RBP7.21□□□□□ -1.25
LIMCH1-201ENST00000313860 ABCA6Q8N139 1617 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 USP42Q9H9J4 1324 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR5K4A6NMS3 321 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 DHRS7CA6NNS2 312 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 A8MU76 341 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 COCHO43405 550 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 RAD1O60671 282 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CBX7O95931 251 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CELP19835 753 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR1E1P30953 314 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 HTR7P34969 479 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 RPS19P39019 145 aaKnown RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 KIR3DL1P43629 444 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 NDST1P52848 882 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 ILKQ13418 452 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 C6orf136Q5SQH8 315 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 FAM162BQ5T6X4 162 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 LIPJQ5W064 366 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 DPPA4Q7L190 304 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CLNKQ7Z7G1 428 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR5L2Q8NGL0 311 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 HOXB13Q92826 284 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CIB3Q96Q77 187 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SH2D3AQ9BRG2 576 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SEC22CQ9BRL7 303 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 MECRQ9BV79 373 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TBL1XR1Q9BZK7 514 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SIX2Q9NPC8 291 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SPHKAPQ2M3C7 1700 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CXCR6O00574 342 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 FABP7O15540 132 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SCO2O43819 266 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 XYLBO75191 536 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 MT-ND5P03915 603 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 PDGFAP04085 211 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 EBLN1P0CF75 366 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 AKR1A1P14550 325 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 GNAZP19086 355 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 NDUFV2P19404 249 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 MEOX2P50222 304 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 PMS2P11Q13670 270 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 GRB7Q14451 532 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CBX2Q14781 532 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 RNLSQ5VYX0 342 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 FDX2Q6P4F2 183 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 NOTUMQ6P988 496 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 C17orf107Q6ZR85 190 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SPRED1Q7Z699 444 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TGIF2LYQ8IUE0 185 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC35F2Q8IXU6 374 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM123Q8N131 208 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR9Q2Q8NGE9 314 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 RAB7BQ96AH8 199 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CMKLR1Q99788 373 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 HOPXQ9BPY8 73 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CORO1BQ9BR76 489 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 GBA3Q9H227 469 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TRAPPC1Q9Y5R8 145 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 AZIN1O14977 448 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 LDB2O43679 373 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 JRKO75564 520 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SYNGR4O95473 234 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CLDN1O95832 211 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 HTR1DP28221 377 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 PSMB10P40306 273 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 HAAOP46952 286 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 CCR9P51686 369 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 NFE2Q16621 373 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 PPP1R18Q6NYC8 613 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 LRFN4Q6PJG9 635 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TMEM150AQ86TG1 271 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 MON1AQ86VX9 555 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 FMR1NBQ8N0W7 255 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SLC15A4Q8N697 577 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 POC1AQ8NBT0 407 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR1S2Q8NGQ3 325 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 OR4A16Q8NH70 328 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 AQP10Q96PS8 301 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 ULBP2Q9BZM5 246 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 ZCCHC4Q9H5U6 513 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 SDHAF3Q9NRP4 125 aa7.21□□□□□ -1.26
LIMCH1-201ENST00000313860 TRBV11-1A0A0K0K1C0 115 aa7.2□□□□□ -1.26
LIMCH1-201ENST00000313860 GNG7O60262 68 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms