RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 OPN5Q6U736 354 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ARSKQ6UWY0 536 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 FAM46BQ96A09 425 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GABARAPL3Q9BY60 117 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 NMNAT1Q9HAN9 279 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 BCL2L10Q9HD36 194 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 DOCK6Q96HP0 2047 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 LYRM1O43325 122 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GABRB3P28472 473 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CX3CR1P49238 355 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLBPQ14493 270 aaKnown RBP eCLIP3.78□□□□□ -1.8
USH2A-201ENST00000307340 SHHQ15465 462 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ECM1Q16610 540 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLC51BQ86UW2 128 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ADGRF3Q8IZF5 1079 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 GTPBP8Q8N3Z3 284 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 L3MBTL4Q8NA19 623 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 LRR1Q96L50 414 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PCTPQ9UKL6 214 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TMEM184BQ9Y519 407 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 C2orf72A6NCS6 295 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 OR4F21O95013 312 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 BPIP17213 487 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 AKR1C4P17516 323 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ELAVL4P26378 380 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 ABCD3P28288 659 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 DDOSTP39656 456 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CATR1Q13166 79 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 EIF2B1Q14232 305 aaKnown RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 PKDCCQ504Y2 493 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 UBXN11Q5T124 520 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ANKRD54Q6NXT1 300 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ZNF101Q8IZC7 436 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 HCAR1Q9BXC0 346 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SLC39A9Q9NUM3 307 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CXXC1Q9P0U4 656 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 SH2B3Q9UQQ2 575 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 TP53TG5Q9Y2B4 290 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PIAS3Q9Y6X2 628 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 ANKRD34BA5PLL1 514 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SGK494L7N484 410 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 SPI1P17947 270 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 EDNRAP25101 427 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 PLGLAQ15195 96 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CLEC6AQ6EIG7 209 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CXCL17Q6UXB2 119 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 CCBE1Q6UXH8 406 aaPredicted RBP3.78□□□□□ -1.8
USH2A-201ENST00000307340 WDFY2Q96P53 400 aa3.78□□□□□ -1.8
USH2A-201ENST00000307340 EPHB6O15197 1021 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 ITGA5P08648 1049 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 IMPA1P29218 277 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 ZNF81P51508 661 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 MXD1Q05195 221 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 SLC5A12Q1EHB4 618 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 SPANXDQ9BXN6 97 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 TVP23BQ9NYZ1 205 aa3.78□□□□□ -1.81
USH2A-201ENST00000307340 KIF26AQ9ULI4 1882 aaPredicted RBP3.78□□□□□ -1.81
USH2A-201ENST00000307340 A0A087WWV3 80 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 LINC00854A0A1B0GVQ3 168 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 VILLO15195 856 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 GP1BAP07359 652 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 CELP19835 753 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 RAB5AP20339 215 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 CHRNEQ04844 493 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 C17orf107Q6ZR85 190 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 OR5T1Q8NG75 326 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 HUS1BQ8NHY5 278 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 ZNF707Q96C28 371 aaPredicted RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 SH3YL1Q96HL8 342 aaPredicted RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 LRCH3Q96II8 777 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 CELF6Q96J87 481 aaKnown RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 WDR92Q96MX6 357 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 TMEM100Q9NV29 134 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 DIMT1Q9UNQ2 313 aaKnown RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 GABRPO00591 440 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 PLRG1O43660 514 aaKnown RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 MT-CYBP00156 380 aaPredicted RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 ITGB1P05556 798 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 MAGP20916 626 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 MARCKSL1P49006 195 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 BTG2P78543 158 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 DUSP8Q13202 625 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 RNF212Q495C1 297 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 GPR153Q6NV75 609 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 ACBD4Q8NC06 268 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 C16orf70Q9BSU1 422 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 PIF1Q9H611 641 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 RNF19AQ9NV58 838 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 HPF1Q9NWY4 346 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 MCTS1Q9ULC4 181 aaKnown RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 BOKQ9UMX3 212 aaPredicted RBP3.77□□□□□ -1.81
USH2A-201ENST00000307340 OR1A2Q9Y585 309 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 PCDHGA7Q9Y5G6 932 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 VNN1O95497 513 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 TFPIP10646 304 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 SRCP12931 536 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 ADRB3P13945 408 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 HSPB3Q12988 150 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 SLAMF1Q13291 335 aa3.77□□□□□ -1.81
USH2A-201ENST00000307340 SIM2Q14190 667 aaPredicted RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms