RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 MEIS3P1A6NDR6 274 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 CD8B2A6NJW9 211 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 B4DXG7 233 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 GATCO43716 136 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 PIRTP0C851 137 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 HAPLN1P10915 354 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 CD8BP10966 210 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TPT1P13693 172 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 PTNP21246 168 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ETV3P41162 512 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZFP36L2P47974 494 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 NKX3-2P78367 333 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 PUS10Q3MIT2 529 aaKnown RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 TRIM61Q5EBN2 209 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZBTB37Q5TC79 503 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LIPKQ5VXJ0 399 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 B3GNTL1Q67FW5 361 aaPredicted RBP6.03□□□□□ -1.44
VPS35-201ENST00000299138 DHRS11Q6UWP2 260 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 TMEM64Q6YI46 380 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 MSRB3Q8IXL7 192 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 ZNF561Q8N587 486 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 GNPDA2Q8TDQ7 276 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 HBEGFQ99075 208 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 A4GALTQ9NPC4 353 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 DNAJC27Q9NZQ0 273 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 LAMP5Q9UJQ1 280 aa6.03□□□□□ -1.44
VPS35-201ENST00000299138 HSPB2A8KAH6 182 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ARHGAP33O14559 1287 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ATG13O75143 517 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 DEDDO75618 318 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 POP4O95707 220 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 MRPL3P09001 348 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 IQCF3P0C7M6 154 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NTF3P20783 257 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 HOXD9P28356 352 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 TSFMP43897 325 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 SOX4Q06945 474 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 HSPB2Q16082 182 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TAF9Q16594 264 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ATXN7L2Q5T6C5 722 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 C12orf73Q69YU5 71 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RGMBQ6NW40 437 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZNF585AQ6P3V2 769 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 GPR155Q7Z3F1 870 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FJX1Q86VR8 437 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 C11orf42Q8N5U0 333 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FAM71CQ8NEG0 241 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SGTBQ96EQ0 304 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 DCBLD2Q96PD2 775 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SORCS2Q96PQ0 1159 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 DCLRE1CQ96SD1 692 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 TMEM43Q9BTV4 400 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TMPRSS13Q9BYE2 586 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 PELI2Q9HAT8 420 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SPATA6Q9NWH7 488 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 PCDHB7Q9Y5E2 793 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TMEM72A0PK05 275 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 E9PQ18 207 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RCBTB2O95199 551 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SOX14O95416 240 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TTRP02766 147 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ERCC1P07992 297 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 JMJD7P0C870 316 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CEBPBP17676 345 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RAB3AP20336 220 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 GINS1Q14691 196 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 MARCH8Q5T0T0 291 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ALKAL2Q6UX46 152 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SLC24A5Q71RS6 500 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RTL10Q7L3V2 364 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 C12orf40Q86WS4 652 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR4K17Q8NGC6 315 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR52B6Q8NGF0 335 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR13C3Q8NGS6 347 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 DTD1Q8TEA8 209 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZNRF4Q8WWF5 429 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NANOS1Q8WY41 292 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 MFFQ9GZY8 342 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 KATNBL1Q9H079 304 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TLR9Q9NR96 1032 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 C17orf113A0A1B0GUU1 675 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TLX2O43763 284 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 PCDH7O60245 1069 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FZD6O60353 706 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 STC2O76061 302 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TPOP07202 933 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TYRP1P17643 537 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ERVK-21P61565 698 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZNF91Q05481 1191 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FLYWCH1Q4VC44 716 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 BHLHA9Q7RTU4 235 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NUDT13Q86X67 352 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 HS3ST5Q8IZT8 346 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 STPG2Q8N412 459 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR8U1Q8NH10 309 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR7D2Q96RA2 312 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CCM2Q9BSQ5 444 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TTPALQ9BTX7 342 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 C8orf33Q9H7E9 229 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 TM7SF3Q9NS93 570 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms