RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PRR23D1E9PI22 279 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 IL1AP01583 271 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 GPR89BP0CG08 455 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 PRR23D2P0DMB1 279 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 MYL9P24844 172 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 FPR3P25089 353 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 PRKAR1BP31321 381 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SRP9P49458 86 aaKnown RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 EFNB1P98172 346 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 IFITM2Q01629 132 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 ZNF322Q6U7Q0 402 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 PLET1Q6UQ28 207 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 ABHD13Q7L211 337 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SSX6Q7RTT6 188 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 ERMAPQ96PL5 475 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 MRPL15Q9P015 296 aaKnown RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 EXTL2Q9UBQ6 330 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 OR10H1Q9Y4A9 318 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 HEBP2Q9Y5Z4 205 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 FREM2Q5SZK8 3169 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 POLR1CO15160 346 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 FOXK2Q01167 660 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.4■□□□□ 0.062e-6■■□□□ 14.5
VPS54-201ENST00000272322 CEACAM19Q7Z692 300 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SLC22A18ASQ8N1D0 253 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 OR6F1Q8NGZ6 308 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 OR4C6Q8NH72 309 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 CHAC2Q8WUX2 184 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SLC22A18Q96BI1 424 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 EFHD2Q96C19 240 aaPredicted RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 ITPKCQ96DU7 683 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 HS6ST2Q96MM7 605 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 SERINC2Q96SA4 455 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 PHF11Q9UIL8 331 aa15.4■□□□□ 0.06
VPS54-201ENST00000272322 EXOSC1Q9Y3B2 195 aaKnown RBP15.4■□□□□ 0.06
VPS54-201ENST00000272322 CENPXA8MT69 81 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 HLA-DPB1P04440 258 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 GABRA5P31644 462 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 BMP8BP34820 402 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 ETV6P41212 452 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 DECR1Q16698 335 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 TMEM91Q6ZNR0 172 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 QSOX2Q6ZRP7 698 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 BMP8AQ7Z5Y6 402 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 UBQLNLQ8IYU4 475 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 OR2L13Q8N349 312 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 GCDHQ92947 438 aaPredicted RBP15.39■□□□□ 0.05
VPS54-201ENST00000272322 FOXN4Q96NZ1 517 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 DEPDC7Q96QD5 511 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 CCDC32Q9BV29 185 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 RMI1Q9H9A7 625 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 TRAV6A0A075B6T7 132 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 IDSB3KWA1 339 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 TSC22D2O75157 780 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 ALAS2P22557 587 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 STAT5AP42229 794 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 HHEXQ03014 270 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 TPBGQ13641 420 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 HYAL4Q2M3T9 481 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 ALG10BQ5I7T1 473 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 ZNF619Q8N2I2 560 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 TSSK2Q96PF2 358 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 LRIT1Q9P2V4 623 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 MED31Q9Y3C7 131 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 SPACA6W5XKT8 324 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 ARID1AO14497 2285 aa15.39■□□□□ 0.05
VPS54-201ENST00000272322 SYT5O00445 386 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 CHST10O43529 356 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 GPR75O95800 540 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 ELK1P19419 428 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 POU6F2P78424 691 aaPredicted RBP15.38■□□□□ 0.05
VPS54-201ENST00000272322 ARMC6Q6NXE6 501 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 CD300LDQ6UXZ3 194 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 PRR22Q8IZ63 422 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 FGF11Q92914 225 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 PIGUQ9H490 435 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 A0A087WV48 116 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 A0A1B0GWA3 101 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 TMEM129A0AVI4 362 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 URADA6NGE7 173 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 OR6C70A6NIJ9 312 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 BLOC1S5-TXNDC5H3BN57 136 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 LANCL1O43813 399 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 NGFRP08138 427 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 GPR50Q13585 617 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 ZNF544Q6NX49 715 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 GDPGP1Q6ZNW5 385 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 VWA5B2Q8N398 1253 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 MOAP1Q96BY2 351 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 SLC22A4Q9H015 551 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 RNF32Q9H0A6 362 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 TRPV4Q9HBA0 871 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 TMEM27Q9HBJ8 222 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 CLEC1BQ9P126 229 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 CD207Q9UJ71 328 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 PILRAQ9UKJ1 303 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 RASD1Q9Y272 281 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 A0A0B4J293 547 aa15.38■□□□□ 0.05
VPS54-201ENST00000272322 KDM4EB2RXH2 506 aaPredicted RBP15.38■□□□□ 0.05
VPS54-201ENST00000272322 B4DXG7 233 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms