RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 PRAMEF8Q5VWM4 474 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 PRAMEF7Q5VXH5 474 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 FRS2Q8WU20 508 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 RBM14Q96PK6 669 aaKnown RBP11.98□□□□□ -0.49
USP40-201ENST00000251722 HCAR1Q9BXC0 346 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 IGLV3-10A0A075B6K4 115 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 CPMP14384 443 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 ABOP16442 354 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 ADRA1AP35348 466 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 CNN3Q15417 329 aaKnown RBP11.98□□□□□ -0.49
USP40-201ENST00000251722 UGT8Q16880 541 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 DCST2Q5T1A1 773 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 ZBTB44Q8NCP5 570 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 OR5B12Q96R08 314 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 MGAT4CQ9UBM8 478 aa11.98□□□□□ -0.49
USP40-201ENST00000251722 TRAV6A0A075B6T7 132 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ITGB2P05107 769 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ZNF77Q15935 545 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 C14orf28Q4W4Y0 310 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 TMEM185AQ8NFB2 350 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 OR52B6Q8NGF0 335 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC2A12Q8TD20 617 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 TMEM185BQ9H7F4 350 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 KIR3DX1Q9H7L2 352 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 MYOCOSA0A1B0GUC4 107 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 GTF2F2P13984 249 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 GDF1P27539 372 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CTHP32929 405 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CTXN1P60606 82 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC35F1Q5T1Q4 408 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 HIST2H3PS2Q5TEC6 136 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 LAS2Q8IYD9 372 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 OR10A5Q9H207 317 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 OR10A2Q9H208 303 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 PAPPAQ13219 1627 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 A0A0A6YYC8 382 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 ANKRD30BLA7E2S9 258 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 I3L1I5 382 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 PCDH17O14917 1159 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 PRAF2O60831 178 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 RBBP9O75884 186 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC34A2O95436 690 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 BMP1P13497 986 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 MMP12P39900 470 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CSNK1A1P48729 337 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SSR4P51571 173 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CLDN2P57739 230 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 HTRA3P83110 453 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 NPRL3Q12980 569 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SCGB2B2Q4G0G5 96 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CARD17Q5XLA6 110 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 PRRC1Q96M27 445 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ENKD1Q9H0I2 346 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 TBX21Q9UL17 535 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 STUB1Q9UNE7 303 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 WIF1Q9Y5W5 379 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC22A7Q9Y694 548 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CNR2P34972 360 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SELENOWP63302 87 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SH3BP2P78314 561 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 GLO1Q04760 184 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC5A12Q1EHB4 618 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SLC6A19Q695T7 634 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 LEG1Q6P5S2 330 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 OR51A7Q8NH64 312 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ZNF675Q8TD23 568 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ZFP90Q8TF47 636 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 FOXRED1Q96CU9 486 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 SYT11Q9BT88 431 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ULBP3Q9BZM4 244 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 VSX1Q9NZR4 365 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 TMEM181Q9P2C4 612 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 TRBV11-1A0A0K0K1C0 115 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SOCS2O14508 198 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CPOXP36551 454 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 EIF1P41567 113 aaKnown RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 LUMP51884 338 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 PPP1R3AQ16821 1122 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SPRED3Q2MJR0 410 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 TSPYL5Q86VY4 417 aaPredicted RBP11.97□□□□□ -0.49
USP40-201ENST00000251722 OR2T35Q8NGX2 323 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 ZNF251Q9BRH9 671 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 CHRDQ9H2X0 955 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 SMCO4Q9NRQ5 59 aa11.97□□□□□ -0.49
USP40-201ENST00000251722 MYH7P12883 1935 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 RTCAO00442 366 aaKnown RBP11.96□□□□□ -0.49
USP40-201ENST00000251722 LAMP1P11279 417 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 MSX1P28360 303 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 WNT7BP56706 349 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 METTL11BQ5VVY1 283 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 KCTD11Q693B1 232 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 ANKK1Q8NFD2 765 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 NEIL2Q969S2 332 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 ASB16Q96NS5 453 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 ZPBPQ9BS86 351 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 SLAMF7Q9NQ25 335 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 EMC9Q9Y3B6 208 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 FAM155AB1AL88 458 aaPredicted RBP11.96□□□□□ -0.49
USP40-201ENST00000251722 H0YIV9 168 aa11.96□□□□□ -0.49
USP40-201ENST00000251722 OR7A17O14581 309 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms