RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZFP90Q8TF47 636 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 PIK3R3Q92569 461 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 SAP130Q9H0E3 1048 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 ELOVL6Q9H5J4 265 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 LPAR2Q9HBW0 351 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 TXNDC16Q9P2K2 825 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 RNF14Q9UBS8 474 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 MCM8Q9UJA3 840 aa12.68□□□□□ -0.38
CLN3-249ENST00000636685 C19orf53Q9UNZ5 99 aaPredicted RBP12.68□□□□□ -0.38
CLN3-249ENST00000636685 A0A087WV62 115 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 GJE1A6NN92 205 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 ZNF724A8MTY0 619 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 CYTIPO60759 359 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 PSMG1O95456 288 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 PDYNP01213 254 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 ZFP36P26651 326 aaKnown RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 ELK4P28324 431 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 MPIP34949 423 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 SERPINF1P36955 418 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 EIF1P41567 113 aaKnown RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 SLC25A3Q00325 362 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 FOXL1Q12952 345 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 TRAF3Q13114 568 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 ZNHIT3Q15649 155 aaPredicted RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 GABRA6Q16445 453 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 PRSS53Q2L4Q9 553 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 GLE1Q53GS7 698 aaKnown RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 UGT2A3Q6UWM9 527 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 SPATA19Q7Z5L4 167 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 ZDHHC22Q8N966 263 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 FBXO27Q8NI29 283 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 FBF1Q8TES7 1133 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 TMEM186Q96B77 213 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 MUS81Q96NY9 551 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 BBS4Q96RK4 519 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 CPNE1Q99829 537 aa12.67□□□□□ -0.38
CLN3-249ENST00000636685 LMF2Q9BU23 707 aaKnown RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 DMGDHQ9UI17 866 aaKnown RBP12.67□□□□□ -0.38
CLN3-249ENST00000636685 UPK1AO00322 258 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 KCNH1O95259 989 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 JUNP05412 331 aaKnown RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 HKR1P10072 659 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 IFNGR1P15260 489 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 GP5P40197 560 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 IDH3GP51553 393 aaPredicted RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 RAC3P60763 192 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 ZAR1Q86SH2 424 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 ZCCHC24Q8N2G6 241 aaKnown RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 B4GALNT2Q8NHY0 566 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 RHEBL1Q8TAI7 183 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 SLC6A7Q99884 636 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 RAB1BQ9H0U4 201 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 CDC42EP4Q9H3Q1 356 aaKnown RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 TAS2R16Q9NYV7 291 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 CPSF2Q9P2I0 782 aaKnown RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 GRIP1Q9Y3R0 1128 aa12.66□□□□□ -0.38
CLN3-249ENST00000636685 TNPO3Q9Y5L0 923 aaKnown RBP12.66□□□□□ -0.38
CLN3-249ENST00000636685 B9A039 149 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 LYNX1G3V0Z9 82 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 PGRMC1O00264 195 aaKnown RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 ITGA5P08648 1049 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 LYNX1P0DP58 116 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 SSTR1P30872 391 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 NCBP2P52298 156 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLN3-249ENST00000636685 UBA52P62987 128 aaKnown RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 RIN1Q13671 783 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 SLC29A2Q14542 456 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 TRADDQ15628 312 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 CD226Q15762 336 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 C9orf135Q5VTT2 229 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 C1orf229Q6ZS94 237 aaPredicted RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 CENPLQ8N0S6 344 aaPredicted RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 ZNF786Q8N393 782 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 SELENOMQ8WWX9 145 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 PBKQ96KB5 322 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 MRGPRX4Q96LA9 322 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 NSUN5Q96P11 429 aaKnown RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 LRRC37BQ96QE4 947 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 SUCNR1Q9BXA5 334 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 C3orf14Q9HBI5 128 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 HHATLQ9HCP6 504 aa12.65□□□□□ -0.38
CLN3-249ENST00000636685 DDX18Q9NVP1 670 aaKnown RBP12.65□□□□□ -0.38
CLN3-249ENST00000636685 LOC105371242A0A075B767 164 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 MYO1GB0I1T2 1018 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 OIP5O43482 229 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 ALX3O95076 343 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 AVPP01185 164 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 NGFRP08138 427 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 OR4A8P0C604 315 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 CRABP2P29373 138 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 SLC7A1P30825 629 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 PPOXP50336 477 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 RAE1P78406 368 aaKnown RBP12.64□□□□□ -0.39
CLN3-249ENST00000636685 TOMM34Q15785 309 aaPredicted RBP12.64□□□□□ -0.39
CLN3-249ENST00000636685 ADIPOQQ15848 244 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 OR7E24Q6IFN5 339 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 FAHD2BQ6P2I3 314 aaPredicted RBP12.64□□□□□ -0.39
CLN3-249ENST00000636685 ZBED8Q8IZ13 594 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 OR2L13Q8N349 312 aa12.64□□□□□ -0.39
CLN3-249ENST00000636685 PTGR2Q8N8N7 351 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms