RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TMED5Q9Y3A6 229 aa14.37□□□□□ -0.11
CLN3-246ENST00000636228 A0A1W2PNR3 127 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 TLDC2A0PJX2 215 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 GTPBP1O00178 669 aaKnown RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 SLU7O95391 586 aaKnown RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 C6orf47O95873 294 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 SOD3P08294 240 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 EIF1P41567 113 aaKnown RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 P2RX1P51575 399 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 RPS4XP62701 263 aaKnown RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 TP53BP2Q13625 1128 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 PTGR1Q14914 329 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 MLC1Q15049 377 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 TAB1Q15750 504 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 SPDYE7PQ495Y7 208 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 DCST2Q5T1A1 773 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 SFRP5Q5T4F7 317 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 RNF165Q6ZSG1 346 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ZCCHC23Q6ZST2 131 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 FCRLAQ7L513 359 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 KRTCAP2Q8N6L1 136 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ZNF614Q8N883 585 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 OR5AK3PQ8NH89 298 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 GPR119Q8TDV5 335 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ADAMTS15Q8TE58 950 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 CPNE4Q96A23 557 aaPredicted RBP14.36□□□□□ -0.11
CLN3-246ENST00000636228 C3orf30Q96M34 536 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 STACQ99469 402 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ACTRT3Q9BYD9 372 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 OR10A4Q9H209 315 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 COQ10BQ9H8M1 238 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 TIGARQ9NQ88 270 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 GPATCH2Q9NW75 528 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 KLHL13Q9P2N7 655 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 SLC17A7Q9P2U7 560 aa14.36□□□□□ -0.11
CLN3-246ENST00000636228 ARID1AO14497 2285 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 RAI1Q7Z5J4 1906 aaPredicted RBP14.35□□□□□ -0.11
CLN3-246ENST00000636228 ZNF814B7Z6K7 855 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 RNF223E7ERA6 249 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 PRKD3O94806 890 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 FGF4P08620 206 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 PABPC4LP0CB38 370 aaKnown RBP14.35□□□□□ -0.11
CLN3-246ENST00000636228 IL32P24001 234 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 EDNRAP25101 427 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 HPCAL1P37235 193 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 CDKN1AP38936 164 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 RNPS1Q15287 305 aaKnown RBP14.35□□□□□ -0.11
CLN3-246ENST00000636228 CLEC12BQ2HXU8 276 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 NCMAPQ5T1S8 102 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 OLIG3Q7RTU3 272 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 MTERF4Q7Z6M4 381 aaKnown RBP14.35□□□□□ -0.11
CLN3-246ENST00000636228 CNPY4Q8N129 248 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 ZNF527Q8NB42 609 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 OR5D16Q8NGK9 328 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 OR2W6PQ8NHA6 318 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 OR5P2Q8WZ92 322 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 TRMOQ9BU70 441 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 MID2Q9UJV3 735 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 FAF1Q9UNN5 650 aaPredicted RBP14.35□□□□□ -0.11
CLN3-246ENST00000636228 RNF115Q9Y4L5 304 aa14.35□□□□□ -0.11
CLN3-246ENST00000636228 TMEM114B3SHH9 223 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 SPAG7O75391 227 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 HSPA4LO95757 839 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 CD3EP07766 207 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 YES1P07947 543 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 PRKCAP17252 672 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 ELK4P28324 431 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 ARRB2P32121 409 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 ATP12AP54707 1039 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 RPS26P62854 115 aaKnown RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 KRTAP1-1Q07627 177 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 VEZF1Q14119 521 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 IL23RQ5VWK5 629 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 CLEC4FQ8N1N0 589 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 TMCO5AQ8N6Q1 288 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 BANPQ8N9N5 519 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 ZFP90Q8TF47 636 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 PPP3R2Q96LZ3 170 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 HDHD5Q9BXW7 423 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 HOXD1Q9GZZ0 328 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 QRSL1Q9H0R6 528 aaKnown RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 PRSS50Q9UI38 385 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 ING1Q9UK53 422 aaPredicted RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 MAGED1Q9Y5V3 778 aaPredicted RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 GPC6Q9Y625 555 aaPredicted RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 ANK3Q12955 4377 aaKnown RBP14.34□□□□□ -0.11
CLN3-246ENST00000636228 DSCAMO60469 2012 aa14.34□□□□□ -0.11
CLN3-246ENST00000636228 JMJD1CQ15652 2540 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 DPRXA6NFQ7 191 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 H3BNH8 94 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 KIF2AO00139 706 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 CFLARO15519 480 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 NPHS1O60500 1241 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 NDUFS7O75251 213 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 SKAP2O75563 359 aaPredicted RBP14.33□□□□□ -0.12
CLN3-246ENST00000636228 CYP7B1O75881 506 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 LYZL6O75951 148 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 SOX30O94993 753 aa14.33□□□□□ -0.12
CLN3-246ENST00000636228 DANCRP0C864 163 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms